US 6,034,235 AGrant
Growth Inhibitor for Leukemia Cell Comprising Antisense Oligonucleotide Derivative to Wilms Tumor Gene (WT1)
Issue Date:2000-03-07
•8 Claims
•8 Drawing Sheets
Abstract
This invention provides a growth inhibitor for leukemia cells comprising an antisense oligonucleotide derivative to Wilms' tumor gene (WT1).
Metadata
Assignees
- Tadamitsu Kishimoto
- Sugiyama; Haruo
Inventors
- Haruo Sugiyama
- Tamotsu Yamagami
- Kazushi Inoue
Application Information
Application Number:US 9526641
Filing Date:1997-12-01
Priority Date:1995-06-01
Art Unit:165
Classifications
IPC:
C07H 2104
Field of Search:
53643523.1;24.31;24.56;325;366
Patent Drawings (8 sheets)
Description
TECHNICAL FIELD
The present invention relates to a growth inhibitor for leukemia cells comprising an antisense nucleotide derivative.
BACKGROUND ART
Wilms' tumor is a pediatric kidney tumor that occurs as a result of deactivation of both allele of the Wilms' tumor gene (WT1) located on chromosome 11p13 (Call. K. M., et al., Cell 60; 509, 1990). A non-coding upstream sequence of WT1 (C. E. Campbell, et al., Oncogene 9: 583-595, 1994) and a coding region that includes the intron (D. A. Haber, et al., Proc. Natl. Acad. Sci. USA, 88: 9618-9622, 1991) have previously been reported, and they are expected to be involved in the growth and differentiation of the tumor and so forth (D.A. Haber, et al., Proc. Natl. Acad. Sci. USA, 88; 9618-9622, 1991).
However, it was not known that WT1 is involved in the growth of leukemia cells, and that an antisense oligonucleotide derivative to WT1 suppresses and inhibits growth of leukemia cells.
DISCLOSURE OF THE INVENTION
Thus, the present invention provides a growth inhibitor for leukemia cells comprising an antisense nucleotide derivative to Wilms' tumor gene (WT1).
BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 is a graph showing the inhibitory effects of oligonucleotide on the growth of leukemia cell line K562.
FIG. 2 is a graph showing the relationship between the concentrations of oligonucleotides SE3 and AS3 and the growth of leukemia cell line K562.
FIG. 3 is a graph showing the relationship between the concentrations of oligonucleotides SE4 and AS4 and the growth of leukemia cell line K562.
FIG. 4 is a graph showing the time-based effects of oligonucleotides SE3 and AS3 on the growth of leukemia cell line K562.
FIG. 5 is a graph showing the effects of various oligonucleotides on the growth of leukemia cell line K562.
FIG. 6 is a graph showing the inhibitory effects of various oligonucleotides on the growth of leukemia cell line HEL positive for expression of WT1.
FIG. 7 is a graph showing the inhibitory effects of various oligonucleotides on the growth of leukemia cell line THP-1 positive for expression of WT1.
FIG. 8 is a graph showing the inhibitory effects of various nucleotides on the growth of malignant lymphoma cell line U937 negative for expression of WT1.
FIG. 9 is a graph showing the effects of oligonucleotides SE3 and AS3 on the formation of leukemia cell colonies from bone marrow mononuclear cells derived from leukemia patients.
FIG. 10 is a graph showing the effects of oligonucleotides SE3 and AS3 on the formation of granulocytic macrophage colonies from bone marrow mononuclear cells derived from healthy volunteers.
FIG. 11, panel A is a photograph of the results of electrophoresis indicating a decrease in the level of WT1 protein in calls in the case of adding various WT1 antisense oligonucleotides to a culture of K562 cells.
FIG. 11, panel B indicates a decrease in the level of WT1 protein in cells in the case of adding WT1 antisense oligonucleotides to fresh leukemia cells from a patient with AML.
DETAILED DESCRIPTION OF THE INVENTION
The present invention provides A leukemia cell growth inhibitor comprising an antisense oligonucleotide derivative to WT1. The antisense oligonucleotide derivatives used in the present invention is an antisense oligonucleotide derivative to WT1, examples of which include that to the transcription capping site of WT1, gene that to the translation starting region, that to an exon or that to an intron.
For example, a nucleotide sequence of a sense DNA strand of the region containing the transcription capping site of WT1 is represented with SEQ ID NO: 9. In addition, a nucleotide sequence of a sense DNA strand of exons 1 to 10 of the region coding for WT1 is represented with SEQ ID NO: 10 to 19. The present invention uses an antisense oligonucleotide derivative to such a nucleotide sequence of the sense DNA strand of WT1. This antisense oligonucleotide derivative is an antisense oligonucleotide derivative comprising 5 to 50 continuous nucleotides and preferably 9 to 30 nucleotides of antisense DNA or RNA chain for WT1, or 5 to 70 nucleotides and preferably 9 to 50 nucleotides intermittently or partially complementary to DNA or RNA chain for WT1 and capable of binding to DNA or RNA chain for WT1.
Examples of antisense oligonucleotide derivatives to the transcription capping site include those having the following nucleotide sentences: 5'-AGGGTCGAATGCGGTGGG-3' (SEQ ID NO: 2) and 5'-TCAAATAAGAGGGGCCGG-3' (SEQ ID NO: 4). In addition, examples of antisense oligonucleotide derivatives to the translation starting region include antisense oligonucleotide derivatives to the translation starting codon ATG and its upstream and/or downstream region such as the following nucleotide sequence: 5'-GTCGGAGCCCATTTGCTG-3' (SEQ ID NO: 6).
In addition, ten exons are contained in the region coding for WT1, and examples of the antisense oligonucleotide derivative of the present invention include those to the sequences contained in any of these exons, those to the sequences extending over any two consecutive exons after splicing or those to the sequences extending over a consecutive intron and exon, and those to sequences of all introns and the 3' and 5' non-coding regions. One example of an antisense oligonucleotide derivative is that to the 6th exon, an example of which is that to the following nucleotide sequence: 5'-CGTTGTGTGGTTATCGCT-3' (SEQ ID NO: 8).
Moreover, although there are no particular Restrictions or. the region corresponding to the antisense oligonucleotide derivative of the present invention having a nucleotide sequence intermittently or partially complementary to the DNA or RNA chain for WT1, those similar to ribozymes having a function to cleave the DNA chain or RNA chain for WT1 are included in these.
The structure of antisense olignucleotide derivative used in the present invention is as shown in chemical formula 1, wherein X may independently be an oxygen (O), sulfur (O), lower alkyl group, primary amine or secondary amine. Y may independently be an oxygen (O) or sulfur (S). Z is a hydrogen atom or hydroxyl group. B is chosen from adenine, guanine, thymine or cytosine when Z is a hydrogen atom, or chosen from adenine, guanine, uracil or cytosine when z is a hydroxyl group, and is mainly an oligonucleotide complementary to DNA or DNA coding for WT1. R is independently a hydrogen atom, dimethoxytrityl group or lower alkyl group. N is an integer of 7-28. ##STR1##
Chemical Formula 1
Preferable examples of antisense oligonucleotide derivatives include not only non-modified antisense oligonucleotides, but also modified antisense oligonucleotides. Examples of these modified forms include low alkyl phosphonate forms like the above-mentioned methylphosphonate form or ethylphosphonate form, and other phosphorothioate forms or phosphoroamidate forms (see chemical formula 2). ##STR2##
Chemical Formula 2
These antisense oligonucleotide derivatives can be obtained according to the following conventional methods.
The antisense oligonucleotides in which X and Y in chemical formula 1 are O and Z is a hydrogen atom or hydroxyl group are easily synthesized by a commercially available DNA synthesizer (for example, that manufactured by Applied Biosystems).
Antisense oligodeoxyribonucleotide in which Z is a hydrogen atom can be obtained by a method such as solid phase synthesis using phosphoroamidite or solid phase synthesis using hydrogen phosphonate.
See, for example, T. Atkinson and M. Smith in Oligonucleotide Synthesis: A Practical Approach, ed. M. J. Gait. IRL Press, 35-81 (1984); M. H. Caruthers, Science, 230, 281 (1985); A. Kume, M. Fujii, M. Sekine and M. Hata, J. Org. Chem., 49, 2139 (1984); B. C. Froehler and M. Matteucci, Tetrahedron Lett., 27, 469 (1986); P. J. Garegg, is I. Lindh, T. Regberg, J. Stawinski, R. Stromberg and C. Henrichson, ibid., 27, 4051 (1986); B. S. Sproat and M. J. Gait in Oligonucleotide Synthesis: A Practical Approach, ed. M. J. Gait, IRL Press, 83-115 (1984); S. L. Beaucage and M. H. Caruthers, Tetrahedron Lett., 22, 1859-1862 (1981); M. D. Matteucci and M. H. Caruthers, Tetrahedron Lett., 21, 719-722 (1980); and. M. D. Matteucci and M. H. Caruthers, J. Am. Chem. Soc., 103, 3185-3191 (1981).
Triester phosphate modified forms, in which X is a lower alkoxy group, can be obtained by ordinary methods, such as treatment of an oligonucleotide obtained by chemical synthesis with a tosylchloride solution of DMF, methanol and 2,6-lutidine (Moody H. M., et al., Nucleic Acids Res., 17, 4769-4782 (1989).
Alkylphosphonate modified forms, in which X is an alkyl group, can be obtained by ordinary methods using, for example, phosphoamidite (M. A. Dorman, et al., Tetrahedron, 40, 95-102 (1984); and, K. L. Agarwal and F. Riftina, Nucleic Acids Res., 6, 3009-3024 (1979)).
Phosphorothioate modified forms in which X is S can be obtained by ordinary methods such as solid phase synthesis using sulfur (C. A. Stein, et al., Nucleic Acids Res., 16, 3209-3221 (1988) or solid phase synthesis using tetraethylthiolam disulfide (H. Vu and B. L. Hirschbein, Tetrahedron Letters, 32, 3005-3008 (1991)).
Phosphorodithioate modified form in which X and Y are both S can be obtained by, for example, solid phase synthesis by converting bis-amidite to thioamidite and allowing sulfur to act on the thioamidite (W. K. D. Brill, et al., J. Am. Chem. Soc., 111, 2321-2322 (1989)).
Phosphoroamidate modified forms in which X is a primary amine or secondary amine can be obtained by, for example, solid phase synthesis by treating hydrogen phosphonate with a primary or secondary amine (B. Froehler, et al., Nucleic Acids Res., 16, 4831-4839 (1988)), or by oxidizing amidite with tert-butyl hydroperoxide (H. Ozaki, et al., Tetrahedron Lett., 30, 5899-5902 (1989)).
Although synthesis of antisense oligoribonucleotide in which Z is a hydroxyl group is extremely difficult in comparison with synthesis of antisense oligodeoxyribonucleotide since the 2'-hydroxyl group on ribose (sugar) must be protected, it can be synthesized by suitably selecting the protecting group and phosphorylation method (see, Basic Microbiology Course, Vol. 8, Genetic Engineering, E. Ohtsuka, K. Miura, ed. T. Ando and K. Sakaguchi, Oct. 10, 1987, Kyoritsu Publishing Co., Ltd.).
Purification and confirmation of purity can be performed by high-performance liquid chromatography and polyacrylamide gel electrophoresis. Confirmation of molecular weight can be performed by Electrospray Ionization Mass Spectrometry or Fast Atom Bombardment-Mass Spectrometry.
The antisense oligonucleotide derivatives of the present invention acts at any stage from genomic DNA to mature mRNA, and suppression of its expression is thought to inhibit growth of leukemia cells. Thus, the antisense oligonucleotides of the invention of the present application is expected to be effective in the treatment of leukemia.
Moreover, as will be described later, the antisense oligonucleotide derivatives of the present invention is thought to specifically inhibit leukemia cells without inhibiting the growth of normal bone marrow cells. Thus, it can also be applied to "autologous bone marrow transplantation" and "autologous peripheral blood stem cell transplantation" in which, for example, after first removing bone marrow cells or peripheral blood stem cells from the body and treating them in vitro with the antisense oligonucleotide derivatives of the present invention to inhibit the growth of leukemia cells, only normal bone marrow cells or normal peripheral blood stem cells are returned to the body.
The antisense oligonucleotide derivatives of the present invention can also be used in the form of an external preparation such as a liniment or poultice by mixing with a suitable inactive base.
In addition, the antisense oligonucleotide derivatives of the present invention can also be used in the form of tablets, powders, granules, capsules, liposome capsules, injection preparations, liquids or nose drops by adding a vehicle, isotonic agent, solubility assistant, stabilizer, preservative or analgesic and so forth as necessary, or can be made into a freeze-dried preparation. These formulations can be prepared in accordance with routine methods.
The antisense oligonucleotide derivatives of the present invention can be applied directly to the affected area of the patients, or applied so as to be able to reach the affected area as a result of intravascular administration and so forth. Moreover, antisense inclusion materials can also be used to improve duration and membrane permeation. Examples of these include liposomes, poly-L-lysine, lipids, cholesterol lipofectin and their derivatives.
The dose of the antisense oligonucleotide derivative of the present invention is such that a preferable amount can be used by suitably preparing a dose according to the patient's condition, age, sex and body weight. In addition, the administration method can be suitably selected from various administration methods, including oral administration, intramuscular administration, intraperitoneal administration, intradermal administration, subcutaneous administration, intravenous administration, intraarterial administration and rectal administration according to the patient's conditions, the drug forms and so forth.
The following provides a detailed explanation of the present invention through Examples.
EXAMPLES
Synthesis Example 1
The oligodeoxyribonucleotides used below (SEQ ID NOS: 1 to 8) were synthesized using an automatic synthesizer (Applied Biosystems), purified by high-performance liquid chromatography, precipitated three times with ethanol, and suspended in phosphate buffer. The synthesized oligonucleotides were as listed below.
SEQ ID NO: 1: Sense sequence of transcription capping site (SE1)
SEQ ID NO: 2: Antisense sequence of transcription capping site (AS1)
SEQ ID NO: 3: Sense sequence of transcription capping region (SE2)
SEQ ID NO: 4: Antisense sequence of transcription capping region (AS2)
SEQ ID NO: 5: Sense sequence of translation starting region (SE3)
SEQ ID NO: 6: Antisense sequence of translation starting region (AS3)
SEQ ID NO: 7: Sense sequence of exon 6 (SE4)
SEQ ID NO: 8: Antisense sequence of exon 6 (AS4)
EXAMPLE 1
5.times.10.sup.4 cells/ml of leukemia cell line K562 positive for WT1 expression were inoculated into RPMI 1640 medium not containing fetal calf serum (FCS) contained in the wells of a flat-bottom 96-well plate in the amount of 100 .mu.l/well. Each oligonucleotide was added to a series of three wells to a final concentration of 200 .mu.g/well. After incubating for 2 hours, FCS was added to each well to a final concentration of 10%. Oligonucleotides were then added to the culture in an amount equal to half the above-mentioned amount every 24 hours.
After culturing for 96 hours, the numbers of viable cells were counted using the pigment elimination method. An equal volume of PBS not containing nucleotide was added as the control culture, and the number of cells of this control culture was taken to be 100%.
The results are shown in FIG. 1. As is clear from this figure, all of the antisense oligonucleotides powerfully inhibited cell growth in comparison with the corresponding sense oligonucleotides.
EXAMPLE 2
The same experiment as that described in Example 1 was performed, but oligonucleotides SE3 and AS3 were added at various concentrations. As is clear from FIG. 2, although sense oligonucleotide (SE3) virtually did not inhibit cell growth, antisense oligonucleotide (AS3) inhibited cell growth in a dose dependent manner.
EXAMPLE 3
The same experiment as that described in Example 1 was performed, but oligonucleotides SE4 and AS4 were added at various concentrations. As is clear from FIG. 3, although sense oligonucleotide (SE4) virtually did not inhibit cell growth, antisense oligonucleotide (AS4) inhibited cell growth in a dose dependent manner.
EXAMPLE 4
The same experiment as described in Example 1 was performed. However, the cells were cultured in a flat-bottom 24-well plate at a concentration of 5.times.10.sup.4 cells/ml and in the amount of 1 ml/well. Oligonucleotides SE3 and AS3 were added and the numbers of viable cells were counted daily for 2 to 5 days. The results are shown in FIG. 4. A is clear from the figure, although cell growth similar to the control was observed in the case of adding sense oligonucleotide, in the case of adding antisense oligonucleotide, cell growth was inhibited.
EXAMPLE 5
The same experiment as described in Example 1 was performed. However, SE3, AS3, an antisense oligonucleotide 5'-AGAGAAGAAGGGAACCCC-3' (SEQ ID NO: 20) (MPO-AS) to myeloperoxidase (MPO) gene, and an antisense oligonucleotide 5'-GCGTGGGCAGCCTGGGAA-3' (SEQ ID NO: 21) (FV-AS) to blood coagulation factor V (FV) were used for is the oligonucleotides. As is clear from FIG. 5, cell growth was inhibited only in the case of using AS3.
EXAMPLE 6
The same experiment as described in Example 1 was performed, but WT1 expression-positive cell lines HEL and THP-1 as well as WT1 expression-negative cell line U937 were used as the experimental cells. The same eight types of oligonucleotides used in Example 1 were used as the oligonucleotides. In the case of using WT1 expression-positive cell line HEL (FIG. 6) or THP-1 (FIG. 7), cell growth was inhibited by antisense oligonucleotide. In contrast, in the case of using WT1 expression-negative cell line U937 (FIG. 8), cell growth was not inhibited even if antisense oligonucleotide was added.
EXAMPLE 7
Bone marrow cells from leukemia patients and healthy volunteers were treated with heparin and suspended in RPMI 1640 medium to obtain bone marrow mononuclear cells by Ficoll-Hypaque density gradient centrifugation. A protein (100 .mu.l/well) of the above-mentioned mononuclear cells at a cell density of 1.5.times.10.sup.6 cells/ml were added to a flat-bottom 96-well plate containing .alpha.-MEM containing GM-CSF (100 ng/ml) and IL-3 (100 units/ml). Treatment with oligonucleotides (SE3 and AS3) was performed in the same manner as Example 1.
After 96 hours, the cells were collected and plated in methylcellulose medium [1.2% methylcellulose .alpha.-MEM, 20% FCS, GM-CSF (100 ng/Ml), G-CSF (100 ng/ml), IL-3 (100 units/ml) and SCF (10 ng/ml)]. Culturing was performed in three series. The number of leukemia cell colonies (CPU-L) and granulocytic macrophage colonies (CFU-GM) were counted on day 14.
FIG. 9 shows the morphology of the leukemia colonies in samples from four leukemia patients (two acute myeloid leukemia (AML) patients and 2 chronic myeloid leukemia (CML) patients). The formation of colonies can be seen to be inhibited by antisense oligonucleotide. FIG. 10 shows the appearance of granulocytic macrophage colonies in samples from healthy volunteers. Colony formation is not inhibited by either of the antisense oligonucleotides.
EXAMPLE 8
Random oligonucleotide, oligonucleotide AS1, oligonucleotide AS2 or oligonucleotide AS3 was added at a concentration of 200 .mu.g/ml to K562 cells (A) or fresh leukemia cells from a patient with AML (B) at a cell density of 5.times.10.sup.4 cells/well in a 24-well plate, followed by addition of the oligonucleotides at a concentration of 100 .mu.g/ml every 24 hours. The cells were harvested 4 days after the initial treatment with oligonucleotide, washed with PBS and lysed with Laemli sample buffer.
Each cell lysate from 2.times.10.sup.4 cells was boiled for 5 minutes, and then applied to each lane of 5% dodecylsodium sulfate-polyacrylamide gel. Following electrophoresis, the proteins were transferred to an Immobilon polyvinylidene difluoride filter (Millipore Corp. Massachusetts, USA). This filter was then probed using an anti-WT1 polyclonal antibody to synthetic polypeptide (amino acid positions 177 to 192: Lys His Glu Asp Pro Met Gly Gln Gln Gly Ser Leu Gly Glu Gln Gln (SEQ ID NO: 22)). This was followed by treatment with horseradish peroxidase-bound anti-immunoglobulin antibody (Amersham, Little Chalfont, U.K.). After washing, the filter was immersed in detection reagent (Amersham, Little Chalfont, U.K.) for 1 hour followed by autoradiography treatment for 1 to 5 minutes.
After washing twice with TBST (Tris buffer containing 0.05% Tween 20), the filter was probed with anti-actin monoclonal antibody (Oncogene science Inc., New York, USA) followed by autoradiography in the manner described above.
The density of the hands corresponding to WT1 protein and actin were measured with a CS-9000 densitometer (Shimizu, Kyoto) followed by calculation of the WT1actin ratio.
The results are shown in FIG. 11A and B. In these figures, lane 1 shows the results in the case of adding random oligonucleotide, lane 2 the case of adding oligonucleotide AS3, lane 3 the case of adding oligonucleotide AS1, and lane 4 the case of adding oligonucleotide AS2. In these figures, A indicates the results in the case of using K562 cells, while B indicates those in the case of using fresh leukemia cells from a patient with AML.
As is clear from FIG. 11A, in the case of adding WT1 oligonucleotide to medium containing K562 cells, the level of WT1 protein decreased significantly. On the other hand, control in the form of random nucleotide did not affect the level of WT1 protein. In addition, as is clear from FIG. 11B, in the case of adding WT1 oligonucleotide to medium containing leukemia cells recently isolated from a patient with AML, the level of WT1 protein decreased significantly. These results clearly showed that WT1 antisense oligonucleotide specifically inhibits the growth of leukemia cells by decreasing the level of WT1 protein.
Industrial Applicability
As has been stated above, the antisense oligonucleotides of the present invention is effective in Inhibiting the growth of leukemia cells, and is therefore expected to be useful as a novel leukemia treatment.
Claims
We claim:
1. A growth inhibitor for leukemia cells comprising an antisense oligonucleotide to the Wilm's tumor gene wherein said oligonucleotide is 9-30 nucleotides in length comprising all or a portion of SEQ ID NOS: 2, 4, 6, or 8 and a pharmaceutically acceptable carrier.
2. The growth inhibitor for leukemia cells as set forth in claim 1 wherein said antisense oligonucleotide is an antisense oligonucleotide to at least nine continuing nucleotides at the transcription capping site of the Wilms' tumor gene.
3. The growth inhibitor for leukemia cells as set forth in claim 2 wherein said antisense oligonucleotide consists of the following nucleotide sequence: or 4).
4. The growth inhibitor for leukemia cells as set forth in claim 1 wherein said antisense oligonucleotide is an antisense oligonucleotide to at least nine continuing nucleotides including the translation starting region of the Wilms' tumor gene.
5. The growth inhibitor of leukemia cells as set forth in claim 4 wherein said antisense oligonucleotide consists of the following nucleotide sequence: 6).
6. The growth inhibitor for leukemia cells as set forth in claim 1 wherein said antisense oligonucleotide is an antisense oligonucleotide corresponding to at least nine continuing nucleotides in an exon of the Wilms' tumor gene.
7. The growth inhibitor of leukemia cells as set forth in claim 6 wherein said exon is the 6th exon.
8. The growth inhibitor of leukemia cells as set forth in claim 7 wherein said antisense oligonucleotide consists of the following nucleotide sequence:
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