US 4,946,790 AGrant
Recombinant Plasmid for the Expression of L-Phenylalanine Ammonia-Lyase and Transformed Strain Carrying Same
Issue Date:1990-08-07
•3 Claims
•16 Drawing Sheets
Abstract
A recombinant plasmid for the expression of phenylalanine ammonia-lyase (PAL) is constructed by incorporating therein a combined promoter comprising (a) the fusion promoter (the tac promoter) composed of the trp promoter minus 35 region and the lac UV-5 promoter minus 10 region and (b) the P.sub.L promoter of the lambda phage, the tac promoter and the P.sub.L promoter being connected so as to have the same directional property. This recombinant plasmid permits more efficient expression of PAL in Escherichia coli.
Metadata
Assignee
- Mitsui Toatsu Chemicals, Inc.
Inventors
- Nobuhiro Fukuhara
- Setsuo Yoshino
- Satori Sone
- Yoshiyuki Nakajima
- Nobuyoshi Makiguchi
Application Information
Application Number:US 151234&
Filing Date:1988-02-01
Priority Date:1987-02-06
Art Unit:188
Classifications
IPC:
C12N 121C12N 1570
Field of Search:
435935252.33;320;172.39;14;29;41;73
Patent Drawings (16 sheets)
Description
BACKGROUND OF THE INVENTION
1. Field of the Invention
This invention relates to a recombinant plasmid (a hybrid plasmid) permitting efficient expression of L-phenylalanine ammonia-lyase (hereinafter abbreviated as PAL) in Escherichia coli, and a strain of E. coli which has been transformed with the recombinant plasmid.
More particularly, the invention relates to a hybrid plasmid characterized in that, when the hybrid plasmid is constructed by inserting the structural gene for PAL in an expression vector enabling the expression of an exogenous gene in E. coli according to gene manipulation techniques, a combined promoter obtained by connecting, in a specified order, (a) a hybrid promoter (the tac promoter) constructed from the trp promoter minus 35 region and the lac UV-5 promoter minus 10 region with (b) the P.sub.L promoter of the lambda phage, the so constructed tandem promoter is used as the promoter for the expression of the structural gene for PAL. By using the hybrid plasmid, more efficient expression of PAL in E. coli can be achieved. This invention further relates to a strain of E. coli which has been transformed with the hybrid plasmid.
2. DESCRIPTION OF THE PRIOR ART
PAL is an enzyme catalyzing the reaction in which ammonia is removed from L-phenylalanine to form trans-cinnamic acid. Accordingly, it is useful in the production of L-phenylalanine from cinnamic acid and ammonia by utilizing the reverse reaction.
In the past, PAL has been prepared by extraction from yeasts, molds and plants. However, such organisms that produce PAL can only give a slight yield of PAL, and it has been difficult to prepare PAL on an industrial scale.
Accordingly, as a means for realizing the mass production of PAL, much attention is focused on the genetic recombination technique which enables mass-culturable microorganisms (such as E. coli and the like) to produce PAL.
From this point of view, the present inventors have elucidated the construction of the structural gene for PAL derived from Rhodosporidium toruloides and have succeeded in causing PAL (i.e., the product of the structural gene) to be expressed in E. coli.
Meanwhile, as a host microorganism serving to produce an exogenous protein (i.e., a protein which is not normally produced by the host microorganism) by utilization of the genetic recombination technique, E. coli is being widely used because its biological properties have been fully analyzed, it is not pathogenic, and it can be readily cultured in a medium having a simple composition.
As an expression vector allowing the desired protein to be expressed in E. coli, the vector used is one which basically comprises a promoter permitting the transcription, in E. coli, of a DNA sequence located downstream of the promoter and containing the region coding for the desired exogenous protein, and a vector capable of replicating in E. coli.
Various types of promoters are available for use as the promoter incorporated in such an expression vector. For example, the P.sub.L promoter of the lambda phage of E. coli (hereinafter referred to as the P.sub.L lambda promoter), the promoter of the tryptophan operon of E. coli (hereinafter referred to as the trp promoter), the promoter of the lactose operon of E. coli (hereinafter referred to as the lac promoter), and the fusion promoter (hereinafter referred to as the tac promoter) composed of the trp promoter and the lac promoter are being widely used for that purpose.
Moreover, in order to produce exogenous proteins more efficiently by the use of expression vectors, further investigations are required to search for a new, highly active promoter permitting more efficient expression and/or enhance the activity of conventionally known promoters.
For example, K. Mackenney et al. made an attempt to obtain a more active promoter by connecting a plurality of promoters in series [Gene Amplification and Analysis, Vol. II, pp. 383-415, Elsevier Science Publishing Co., New York (1981)]. Moreover, in order to accomplish the same purpose, Japanese Patent Laid-Open No. 126086/'85 discloses tandem promoters constructed by connecting the P.sub.L lambda promoter or the P.sub.R promoter (i.e., the P.sub.R promoter of the lambda phage of E. coli) in series with the trp promoter or the lac promoter so that the former is located upstream of the latter.
However, the compatibility of the promoter incorporated in an expression vector with the protein to be expressed thereby has not been fully elucidated yet. Accordingly, it is very difficult to make a theoretical presumption, for example, as to whether or not a promoter having high activity for the expression of some proteins can also exhibit high activity for the expression of other proteins. Moreover, much remains unknown about the action of a tandem promoter used to enhance expression efficiency. Thus, the types of promoters to be connected and the order of connection of them must be determined according to the type of a protein to be expressed.
Accordingly, it is necessary to select or develop a promoter permitting more efficient expression, for each of the proteins to be expressed.
For these reasons, the selection or development of a more suitable promoter for the expression of PAL in E. coli has been urgently needed.
Moreover, it has been found that the conventionally known promoters, such as those enumerated above, fail to provide satisfactorily high expression efficiency. Thus, there is a need to develop a new promoter suitable for high-level expression of PAL.
SUMMARY OF THE INVENTION
From the above point of view, the present inventors made an attempt to develop an expression vector suitable for the production of PAL in E. coli according to the aforesaid gene manipulation technique, with their attention focused on the combination of the expression level of PAL and the promoter incorporated in the expression vector. Furthermore, by using various combined promoters, the present inventors also made an extensive investigation on the relationship between the arrangement of the constituent promoters and the expression level of PAL. As a result, it has been found that highly efficient expression of PAL in E. coli can be achieved by using, as the promoter of the expression vector, a combined promoter comprising the tac promoter and the P.sub.L promoter arranged in a specified direction and order. The present invention has been completed on the basis of this finding.
The object of the present invention is to make improvements in the production of PAL in E. coli according to gene manipulation techniques. More specifically, the object of the present invention is to provide a hybrid plasmid which permits more efficient expression of PAL in E. coli, as well as a strain of E. coli which has been transformed with the plasmid and is suitable for use in the mass production of PAL.
In order to accomplish the above and other objects, the present invention provides (A) a hybrid plasmid having
(a) a vector capable of replicating in E. coli,
(b) a combined promoter comprising the tac promoter (the fusion promoter composed of the trp promoter minus 35 region and the lac UV-5 promoter minus 10 region) and the P.sub.L lambda promoter (the P.sub.L promoter of the lambda phase), the P.sub.L lambda promoter being connected downstream of the tac promoter, and
(c) a DNA sequence coding for L-phenylalanine ammonia-lyase, the DNA sequence being inserted downstream of the combined promoter,
the recombinant plasmid being further characterized in that the two promoters constituting the combined promoter have the same directional property and in that the P.sub.L promoter is located upstream of the DNA sequence so as to have the directional property which permits transcription of the DNA sequence; as well as (B) a strain of E. coli which has been transformed with the plasmid.
The hybrid plasmid of the present invention has the structure in which a combined promoter comprising the tac promoter and the P.sub.L lambda promoter is located upstream of a DNA sequence coding for PAL in a specified positional relationship. This characteristic structure makes it possible to achieve more efficient expression of PAL.
Moreover, a transformed strain useful in the efficient mass production of PAL can be obtained by transforming E. coli with the hybrid plasmid of the present invention.
BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 shows restriction endonuclease cleavage maps of the portions of pSW11, pSW2 and pSW13 which are concerned with the structural gene for PAL;
FIGS. 2(A) to 2(D) show the nucleotide sequence of one strand of a DNA sequence including the region coding for phenylalanine ammonia-lyase and contained in the structural gene for PAL cloned in Reference Example;
FIG. 3 is a flow chart illustrating the procedure for constructing the plasmid pSW101;
FIG. 4 is a flow chart illustrating the procedure for constructing the plasmid pYtrp6;
FIGS. 5 to 7 are flow charts illustrating the respective parts of the flow chart of FIG. 4 in more detail;
FIG. 8 generally illustrates the procedures for constructing various hybrid plasmids as described in Example 1 and Comparative Examples 1 to 3; and
FIGS. 9 to 13 more specifically illustrates the procedures for constructing the plasmid pTacll, the plasmid pP.sub.L -PAL-head, the plasmid pSW113, the plasmids pSW115 and pSW116, and the plasmids pSW117 and pSW118, respectively.
DETAILED DESCRIPTION OF THE INVENTION
The hybrid plasmid for the expression of PAL in accordance with the present invention is a recombinant plasmid comprising
(a) a vector capable of replicating in E. coli,
(b) a combined promoter comprising the tac promoter which is a fusion promoter composed of the trp promoter minus 35 region and the lac UV-5 promoter minus 10 region, and the P lambda promoter, the P.sub.L lambda promoter being connected downstream of the tac promoter, and (c) a DNA sequence coding for L-phenylalanine ammonialyase, the DNA sequence being inserted downstream of the combined promoter,
the recombinant plasmid being further characterized in that the two promoters constituting the combined promoter have the same directional property and in that the P.sub.L promoter is located upstream of the DNA sequence so as to have the directional property which permits transcription of the DNA sequence.
As used herein, the terms "upstream" and "downstream" mean that, when the reference direction is defined as the direction leading from the initiation codon to the termination codon of the DNA sequence coding for PAL, the side of a point lying in the same direction as the reference direction is "downstream" of the point and the side lying in the direction opposite to the reference direction is "upstream" of the point.
The vector used in the hybrid plasmid of the present invention can be any DNA fragment that is stably retained in the E. coli and is capable of replicating therein (i.e., has an origin of replication capable of functioning properly in E. coli).
As the origin of replication of the vector, there may be used those derived from pMBl, pSC101, ColEl and p15A. Among others, the origin of replication derived from the plasmid pBR322 is preferred because it originates from pMBl and can be multicopied in E. coli.
Moreover, the aforesaid vector may conveniently contain a gene serving as a selection marker when the hybrid plasmid is introduced into the host microorganism.
As the marker gene, there may be used various genes permitting the expression of ampicillin resistance in E. coli, such as those derived from the plasmids pBR322, pKC7, pMK16, pMG411, pACYC184 and the like; various genes permitting the expression of tetracycline resistance, kanamycin resistance or the like; and the lacZ gene.
The combined promoter incorporated in the hybrid plasmid of the present invention comprises the tac promoter (that is a fusion promoter derived from the trp promoter and the lac promoter), and the P.sub.L lambda promoter which is connected downstream of the fusion promoter.
The tac promoter used in this combined promoter can be constructed from the trp promoter minus 35 region and the lac UV-5 promoter minus 10 region according to the method reported by Bennet, G.N., et al., [Gene, 20, 231 (1982)]. Alternatively, the tac promoter used for this purpose may be cut out of suitable vectors containing it, such as the plasmid pKK223-3 (a product of Pharmacia Co.) constructed by J. Birosius et al.
This tac promoter should preferably contain the SD sequence (Shine-Dalgano sequence).
As the P.sub.L lambda promoter, there may be used a segment, that, contained, for example, in a HindIII-BamHI segment of the DNA of the lambda phage for E. coli. This segment can be directly cut out of the lambda phage DNA by treatment with the restriction endonucleases HindIII and BamHI. Alternatively, the segment may also be cut out of suitable plasmids containing it, such at that used in the method of Shimatake et al. [Nature, 292, 128 (1981)].
When these two promoters constituting the combined promoter are incorporated into the hybrid plasmid, they should be arranged so as to have the same directional relationship, as described previously.
As used herein, the term "same directional property" means that the RNA polymerase recognition site and RNA polymerase binding site characteristic of a promoter are arranged in the same order for both the tac promoter and the P.sub.L lambda promoter.
Moreover, the P.sub.L lambda promoter located downstream of the tac promoter in the combined promoter should be disposed so as to have the directional property which renders it active enough to permit transcription of the DNA sequence located downstream of it (i.e., the directional property in which the RNA polymerase recognition site is located downstream of its RNA polymerase recognition site), and should contain the SD sequence of the P.sub.L promoter.
In the hybrid plasmid of the present invention, the DNA sequence coding for PAL and located downstream of the combined promoter constructed in the above-described manner can be, for example, the DNA sequence (with an initiation codon and a termination codon) containing the structural gene for PAL and having been cloned from a yeast of the genus Rhodosporidium by the present inventors according to the procedure described in the Reference Example given later. Moreover, there may also be used DNA sequences cloned from various types of plants, animals and microorganisms having the ability to produce PAL.
In the hybrid plasmid of the present invention, the mRNA terminator incorporated therein so as to be located downstream of the DNA sequence coding for PAL can be any terminator that functions properly in E. coli. However, in order to maintain a balance with the activity of the aforesaid combined promoter, it is desirable to use a terminator (such as rrnB, trpA or the like) having powerful activity.
The hybrid plasmid of the present invention can be constructed by connecting the aforesaid constituents in the above-defined order according to genetic recombination techniques.
As the methods for connecting the aforesaid constituents, there may be used, for example, those developed by the present inventors and described in the Example given later.
In the hybrid plasmid constructed in the above-described manner, the aforesaid marker gene and origin of replication are preferably connected in such a way that they are arranged in that order and located downstream of the terminator connected downstream of the DNA sequence coding for PAL and that each of them has the directional property permitting it to function properly from the upstream to the downstream side.
When the hybrid plasmid of the present invention which has been constructed in the above-described manner is introduced into the E. coli host, it becomes possible to achieve more efficient expression of PAL in the E. coli host.
The present invention will be more specifically explained with reference to the following Reference Example, Example and Comparative Examples.
(REFERENCE EXAMPLE)
A procedure for cloning the structural gene for PAL is described hereinbelow as a reference example.
REFERENCE EXAMPLE
1. Isolation and Purification of the mRNA for PAL
Using a synthetic medium (Table 1) containing 2% glucose, Rhodosporidium toruloides IFO 559 (also identified as ATCC 10788) was grown at 27.degree. C. under aerated and agitated conditions. Immediately after all of the glucose added at the beginning of the culture was consumed, the cells were collected by centrifugation. The collected wet cells were washed with 0.85% sterile saline and collected again by centrifugation to obtain wet washed cells.
These wet washed cells were immediately suspended in a PAL induction medium [i.e., 0.17% Yeast Nitrogen Base (a product of Difco; ammonium sulfate-free and amino acid-free type) containing 2% L-Phe] in a cell concentration of 0.5-0.8%, and the resulting suspension was shaken at 27.degree. C. to induce PAL.
After 2 hours' PAL induction treatment at 27.degree. C., the cells were recovered from the PAL induction medium by centrifugation. The collected wet cells were suspended in an equal volume of sterile water, and the resulting suspension was dropped into liquid nitrogen to obtain frozen cells.
10 g of the frozen cells, which had been subjected to the PAL induction treatment for 2 hours, were added to liquid nitrogen in a mortar and finely ground with a pestle. Then, as soon as the liquid nitrogen evaporated spontaneously and the ground frozen material began to thaw, 50 ml of buffer solution C [composed of 0.1M Na.sub.2 HPO.sub.4 (pH 7.4), 0.15M sodium chloride, 1% sodium deoxycholate and 1% Triton X-100] containing 5% SDS was added thereto and gently stirred for 30 minutes.
After completion of the stirring, 50 ml of a phenol-chloroform mixture (composed of phenol, chloroform and isoamyl alcohol in a volume ratio of 25:24:1) was added thereto and mixed therewith by stirring for 15 minutes.
The resulting mixture was centrifuged and the aqueous phase was recovered. To this aqueous phase was added 50 ml of fresh phenol-chloroform mixture, followed by stirring for 15 minutes. After centrifugation, the aqueous phase was recovered again. Subsequently, this procedure for extraction with the phenol-chloroform mixture was repeated twice more.
To the finally obtained aqueous phase was added 5M sterile saline so as to give a final sodium chloride concentration of 0.2M. Then, 2.5 volumes of cold ethanol was added thereto. The resulting mixture was stored at -20.degree. C. or below to precipitate the nucleic acid components.
The precipitate so formed was collected by centrifugation, washed with cold ethanol, and then dried under reduced pressure.
The dry material thus obtained was dissolved in 10 ml of sterile water, and the resulting solution was heat-treated at 65.degree. C. for 5 minutes. Thereafter, mRNA was isolated according to Maniatis' method using oligo-d(T) cellulose [Maniatis, T., et al., "Molecular Cloning" (1982)].
The mRNA thus obtained was dissolved in a sample buffer solution (composed of 5M urea, 1 mM EDTA and 0.05% Bromophenol Blue) and then heat-treated at 65.degree. C. for 2 minutes to destroy its higher-order structure. Thereafter, using an 8M urea-acrylamide slab gel (having an acrylamide concentration of 3% and containing 8M urea), the mRNA was electrophoresed at 100 volts for 1.5 hours in an electrophoretic buffer solution (composed of 89 mM Tris, 89 mM boric acid and 2 mM EDTA).
After completion of the electrophoresis, the acrylamide gel was treated with ethidium bromide and mRNA bands were visualized under ultraviolet light. The gel portion corresponding to an mRNA size range of 2.0 to 3.0 kb was divided into three equal parts in the lengthwise direction, and three gel segments were cut out of the slab gel.
Each gel segment was sealed in a dialysis tube, which was immersed in an electrophoretic buffer solution having the aforesaid composition. Thus, the mRNA was electrically eluted from the gel segment.
To the liquid inside each dialysis tube was added a phenolchloroform mixture. The resulting mixture was extracted twice with water and the aqueous phase thus obtained was further extracted with ether to remove any residual phenol. To this aqueous phase were added 1/10 volume of a 3M aqueous solution of sodium acetate (pH 5.2) and then 2.5 volumes of cold ethanol. The resulting mixture was stored at -20.degree. C. to precipitate the mRNA.
In order to determine whether the mRNA fraction purified from each gel segment contained the mRNA for PAL or not, the mRNA contained in each fraction was translated into proteins and the produced proteins were tested with an antibody specific for PAL.
More specifically, each mRNA fraction was subjected to experiments with a cell-free translation kit using the lysate of rabbit reticulocytes [Pelham, H.R., et al., European J. Biochem., 67, 247-256 (1976)].
The rabbit reticulocyte assay kit used was a product of Promega Biotec Co. and the labeled amino acid used was .sup.35 S-methionine (a product of Amersham Co.).
The PAL included in the proteins synthesized in the in vitro rabbit reticulocyte translation system was identified as follows: to the translation mixture was added buffer solution C in order to dissolve the proteins. After the insoluble matter was removed by centrifugation, self-prepared anti-PAL rabbit IgG was added to the supernatant and this reaction mixture was allowed to stand on ice for 30 minutes. Then, anti-rabbit IgG goat serum (self-prepared) was added to the reaction mixture, followed by standing on ice for 30 minutes. Thus, proteins were precipitated together with the rabbit antibody.
The precipitate was recovered by centrifugation, washed twice with buffer solution C, and then dissolved in a solution formed by mixing a mixture of 2% SDS and 10% 8-mercaptoethanol solution with a mixture of 0.1M Tris-phosphate (pH 6.8), 1% SDS and 50% glycerol solution in a volume ratio of 3:1. This reaction mixture was heated at 95.degree. C for 2 hours to sever the disulfide linkages of the proteins. Then, the reaction mixture was subjected to SDS-polyacrylamide slab gel electrophoresis (at an acrylamide concentration of 10%) according to Laemmli's method [Laemmli, U.K., Nature, 227, 680-685 (1970)]. After completion of the electrophoresis, the gel was dried and PAL was detected by autoradiography.
Each of the aforesaid mRNA fractions was tested according to the above-described procedure. Thus, the fraction containing the mRNA for PAL was determined.
2. Conversion of the mRNA for PAL to double-stranded cDNA (ds-cDNA)
The fraction from the gel segment containing the mRNA for PAL, which had been obtained from the cells subjected to 2 hours' treatment for the induction of PAL as described in Section 1 above, was purified. The mRNA thus obtained was treated with AMV reverse transcriptase to convert it to a single-stranded cDNA molecule [Gugger, U., et al., Gene, 25, 263-269 (1983)].
More specifically, a single-stranded cDNA-mRNA hybrid was formed and then treated with RNaseH, DNA polymerase I and a ligase. Thus, the mRNA was removed and, at the same time, double-stranded cDNA (ds-cDNA) was constructed.
3. Construction of ds-cDNA having an Oligo-dC Tail Added to its 3'-Terminus
The ds-cDNA obtained in Section 2 above was treated with terminal deoxynucleotidyl transferase (TdT) to add an oligo-dC tail to the 3'-termini of the ds-cDNA.
More specifically, 3 .mu.g of the ds-cDNA was dissolved in a reaction medium containing a TdT buffer solution [composed of 100mM potassium cacodylate (pH 7.2), 2 mM cobalt chloride and 0.2 mM dithiothreitol] and 0.2 mM dCTP, and pretreated at 37.degree. C. for 5 minutes. Then, 50 units of TdT was added and the resulting reaction mixture was incubated at 37.degree. C. for 15 minutes so as to allow the reaction to proceed. Thereafter, EDTA was added to a final concentration of 40 mM and the reaction mixture was placed on ice. Then, the TdT was denatured and inactivated by the addition of a phenol-chloroform mixture. After the denatured insoluble protein was removed from the reaction mixture by centrifugation, the supernatant was extracted with phenol and the separated aqueous phase was mixed with cold ethanol. The precipitate so formed was collected, washed with 70% ethanol, and then dried under reduced pressure to obtain ds-cDNA having an oligo-dC tails added to its 3'-terminus.
4. Construction of a Hybrid Plasmid
[Joining of a pUC9 molecule (having an oligo-dG tail) to a ds-cDNA molecule (having an oligo-dC tail)]
The oligo-dC tailed ds-cDNA obtained in Section 3 above was joined to the plasmid pUC9 (having an oligo-dG tail; readily available from Pharmacia Co., Sweden) according to Maniatis' method that is known as the dC-dG homopolymer method.
5. Transformation and Selection of Clones
The hybrid plasmid obtained in Section 4 above (consisting of an oligo-dG tailed pUC9 molecule and an oligo-dC tailed ds-cDNA molecule) was introduced into CaC1.sub.2 -treated E. coli [MC 1061; Casadaban, M.T., et al., Method in Enz., Vol. 100, 293-308, Academic Press, New York (1983)]according to the competent cell method.
From about 40,000 transformant colonies obtained in the above-described manner, transformed cells were selected according to a colony hybridization method based on the procedure of Grunstein et al. [Grunstein, M., et al., Proc. Natl. Acad. Sci. U.S.A., 72, 3961 (1971)].
As the probe for this colony hybridization, there was used the .sup.32 P-labeled single-stranded cDNA which had been obtained by forming single-stranded cDNA in the same manner as described in Section 2 above, except that, in place of dCTP, .alpha.-.sup.32 P-dCTP was added to the reaction mixture.
From the positive colonies thus obtained, plasmids were extracted and purified. These plasmids were cleaved with various restriction endonucleases, and the sizes of the resulting DNA fragments were analyzed by agarose gel electrophoresis.
6. Construction of ds-cDNA Containing the Complete Structural Gene for PAL
Plasmids pSW2 and pSW11 were isolated from the transformants obtained in Section 5 above.
Moreover, as a result of the analysis carried out in Section 5 above by using various restriction endonucleases, it was found that the complete cDNA having the full length corresponding to the mRNA for PAL could be constructed by combining pSW2 with pSWll. Thus, each of these plasmids was extracted and purified from transformed cells containing it. The plasmids obtained from cells containing pSW2 were cleaved with the restriction endonuclease BanIII, and then with the restriction endonuclease HindIII. The resulting fragment mixture was fractionated by agarose gel electrophoresis. Thus, a DNA fragment having a size of 4.2 kb was recovered and purified by subjecting it several times to a procedure comprising treatment with a phenol-chloroform mixture and precipitation with cold ethanol.
On the other hand, the plasmids obtained from cells containing pSWll were cleaved with the restriction endonucleases BanIII and HindIII. By subjecting the resulting fragment mixture to electrophoresis, a DNA fragment having a size of 0.8 kb was recovered and purified.
These 4.2 kb and 0.8 kb DNA fragments were cyclized with a ligase, and the resulting product was used to transform E. coli [JM83 (ATCC 35607); Messing, J., and Vieira, J., Gene, 19, 259-268 (1982)].
Plasmids were extracted from the transformants exhibiting ampicillin resistance used as the marker, and then treated with various restriction endonucleases to construct cleavage maps. Thus, a plasmid pSW13 having the full length PAL structure shown in the restriction endonuclease cleavage maps of FIGS. 1 and 3 was selected.
7. Determination of Nucleotide Sequence of Cloned DNA
The aforesaid plasmid pSW13 was isolated from a clone containing it, and this cloned DNA fragment was cleaved with various restriction endonucleases. With suitable restriction fragments, their nucleotide sequences were analyzed by Maxam-Gilbert's method (chemical decomposition method), and also biochemically by Maat's dideoxy method [Maat, J., et al., Nucleic Acids Research, 5, 4537-4545 (1978)]. The resulting nucleotide sequences of the respective DNA fragments were edited by use of the GENAS program produced by Mitsui Information Development Co. The nucleotide sequence so determined is shown in FIGS. 2(A)-(D).
The structural gene for PAL including its initiator codon and terminator codon comprises the base sequence extending from 1 to 2151 in FIGS. 2(A)-(D).
8. Construction of pSW101 (See FIG. 3)
In 14 .mu.l of a reaction medium [composed of 7 mM Tris-HCl (pH 7.5), 0.7 mM EDTA, 7 mM MgC1.sub.2, 175 mM NaCl, 7 mM .beta.-mercaptoethanol and 0.01% bovine serum albumin (hereinafter abbreviated as BSA)], 0.9 .mu.g of the plasmid pUC13 (a product of Pharmacia Co.) was treated with 10 units of the restriction endonuclease SalI at 37.degree. C. for 16 hours. Subsequent treatment with a phenol-chloroform mixture and precipitation with ethanol gave linear DNA.
Then, in a nick translation buffer solution [composed of 50 mM Tris-HCl (pH 7.5), 10mM MgC1.sub.2, 0.1 mM dithiothreitol, 2% BSA, 80.mu.M dATP, 80.mu.M dGTP, 80.mu.M dTTP and 80.mu.M dCTP], this linear DNA was treated with the Klenow fragment of DNA polymerase (a product of Takara Shuzo K.K.) at room temperature for 30 minutes. Thus, its cohesive ends were converted to flush ends. After deproteinization with phenol, DNA was precipitated with cold ethanol and recovered. By treating this DNA fragment with a phosphodiesterase derived from calf spleen (CIP; a product of Bohringer o Co.), the 5'-terminal phosphoryl groups were removed to prevent self-cyclization of the linear pUC13.
On the other hand, the plasmid pSW13 was extracted and purified from cells containing it. In a reaction medium [composed of 4mM Tris-HCl (pH 7.5), 0.4 mM EDTA and 50 mM NaCl), the plasmid pSW13 was treated with the restriction endonuclease DraI at 37.degree. C. for 28 hours. Then, after saline was added thereto so as to give a sodium chloride concentration of 100 mM, the plasmid pSW13 was further treated with the restriction endonucleases EcoRI and HindIII at 37.degree. C. for 16 hours.
After completion of the treatment, the reaction mixture was subjected to agarose gel electrophoresis, and a DNA fragment having a size of 2.3 kb was recovered from the gel. Then, this DNA fragment was subjected three times to a procedure comprising extraction with phenol, treatment with a phenolchloroform mixture, and precipitation with cold ethanol. Thus, there was obtained a cDNA fragment coding for PAL.
In the aforesaid nick translation buffer solution, the cDNA fragment was treated with the Klenow fragment of DNA polymerase at room temperature for 45 minutes, and then subjected three times to a procedure comprising treatment with a phenol-chloroform mixture and precipitation with cold ethanol. Thus, there was obtained a cDNA fragment having flush ends.
Then, a circular plasmid pSW101 was constructed by joining the flush-ended pUC13 fragment to the flushended cDNA fragment by means of a ligase.
Using this hybrid DNA plasmid, E. coli (JM83) was transformed according to the well-known method. A cell strain (MT-10410, FERM BP-1710) was selected from among ampicillin-resistant colonies, and its PAL activity was determined.
Construction of pYtrp6 and Transformation
The plasmid pSW101 constructed in the manner described in Section 8 above was digested with PstI and BamHI. After the resulting fragment mixture was subjected to agarose gel electrophoresis, a DNA fragment of 370bp was recovered. This fragment was divided into two parts, and one of them was digested with BanI and the other with BbeI.
After digestion, the resulting fragment mixtures were subjected to acrylamide gel electrophoresis. Thus, a fragment having a size of 70 bp was recovered from the BanI digest and a fragment having a size of 280 bp was recovered from the BbeI digest.
The 70 bp fragment was treated with DNA polymerase to generate flush ends, to which ClaI(BanIII) linkers were joined by means of a ligase.
This DNA fragment having ClaI linkers joined to its both ends was digested with BanIII and BbeI. On the other hand, pBR322 was digested with BanIII and BamHI, and a DNA fragment of 4.0 kb was recovered by agarose gel electrophoresis. Then, as illustrated in FIG. 5, the aforesaid BanIII+BbeI fragment and the previously prepared BbeI fragment (280 bp) were joined to the pBR322 fragment (4.0 kb) by means of a ligase. Thus, there was obtained a plasmid pSYAl. Then, E. coli (MC1061) was transformed with pSYAl according to the well-known calcium method. E. coli carrying pSYAl was inoculated into 3 ml of LB medium containing ampicillin and incubated at 37.degree. C. overnight. The grown cells were collected by centrifugation and suspended in 60 .mu.l of a solution composed of 50 mM glucose, 25 mM Tris-HCl (pH 8.0) and 10 mM EDTA to form a cell suspension. Then, 40 .mu.l of a 10 mg/ml lysozyme solution was added thereto and the resulting reaction mixture was allowed to stand at room temperature for 5 minutes. After completion of the reaction, 200 .mu.l of 0.2 N NaOH containing 1% SDS was added thereto. After gentle vortexing, the reaction mixture was placed on ice and allowed to stand for 5 minutes. Then, 150 .mu.l of a 5 M sodium acetate solution (pH 4.8) was added thereto. After gentle vortexing, the reaction mixture was placed on ice to stop the reaction.
The resulting lysate was centrifuged at 12,000 rpm for 10 minutes and the supernatant was separated. Then, this supernatant was subjected three times to a procedure comprising treatment with a phenol-chloroform mixture and precipitation with cold ethanol.
From the precipitate thus obtained, pSYAl was extracted according to conventional procedure. After pSYAl was digested with BamHI and BanIII, a DNA fragment having a size of 350 bp was recovered.
Separately, the plasmid pSW13 constructed in Section 6 above was digested with XbaI and the resulting cohesive ends were treated with DNA polymerase to generate flush ends. Then, a HindIII linker was joined thereto by means of a ligase to construct pSW13H. Then, this pSW13H was digested with BamHI and HindIII. By subjecting the resulting DNA fragment mixture to agarose gel electrophoresis, a DNA fragment having a size of 1.9 kb was recovered.
On the other hand, the plasmid pVVl [Brian P. Nicols and Charles Yanofsky, Methods in Enzymology, 101, 155 (1983)] containing a part of the trp operon of E. coli was digested with the restriction endonuclease HinfI.
The DNA fragments of the digested plasmid were separated by agarose gel electrophoresis, and a DNA fragment having a size of 0.9 kb was recovered from the gel according to the previously described procedure.
The cohesive ends of the 0.9 kb DNA fragment generated by digestion with HinfI were converted to flush ends according to the procedure described in Section 8 above. Then, an EcoRI linker (GGAATTCC) was joined to the 5'-flush end by means of a ligase.
The DNA fragment having an EcoRI linker jointed thereto was treated with the restriction endonuclease EcoRI to create a DNA fragment having an EcoRI-cleaved cohesive end [Brian P. Nicols and Charles Yanofsky, Methods in Enzymology, 101, 155 (1983)].
Using a ligase, the DNA fragment having an EcoRI cohesive end was joined to a DNA fragment which had been obtained by treating the EcoRI digest of pBR322 with CIP according to the procedure described in Section 8 above. The resulting product was digested with the restriction endonucleases EcoRI and BglII. By subjecting the resulting digest to agarose gel electrophoresis, a DNA fragment having a size of 0.4 kb was separated and recovered.
This DNA fragment, which had three cleavage sites for the restriction endonuclease TagI, was partially digested with TacI. Thus, a DNA fragment having a size of 345 bp was recovered.
This 345 bp DNA fragment was joined to a 4.3 kb DNA fragment obtained by digesting pBR322 with EcoRI and ClaI. Thus, there was obtained a plasmid pFtrp2 containing the trp promoter.
The plasmid pFtrp2 constructed in the abovedescribed manner was digested with BanIII and HindIII. By subjecting the resulting fragment mixture to agarose gel electrophoresis, a fragment of 4.7 kb was recovered. Then, as illustrated in FIG. 6, this 4.7 kb fragment were joined to the previously prepared BamIII+BamIII fragment of 350 bp and the previously prepared BamHI+HindIII fragment of 1.9 kb by means of a ligase. Thus, a circular plasmid pSYA2 was constructed as illustrated in FIG. 7.
Furthermore, pSYA2 was partially digested with BanIII and the resulting cohesive ends were treated with DNA polymerase to generate flush ends. Then, this fragment was cyclized by means of a ligase to create a plasmid pYtrp6 (FIG. 7) having a cleavage site for NruI.
E. coli MC1061 was transformed with pYtrp6 according to the well-known method. Cells were selected from the resulting ampicillin-resistant colonies and then tested for PAL activity. The construction of pYtrp6 is generally illustrated in the flow chart of FIG. 4 and its greater details are illustrated in FIGS. 5 to 7. Thus, a transformed strain of E. coli exhibiting PAL activity was isolated and named MT-10414 (FERM BP-1712).
(EXAMPLES)
In order to afford a better understanding of the present invention, the following Example and Comparative Examples are given.
The procedures for constructing various plasmids in these Example and Comparative Examples are generally illustrated in FIG. 8.
EXAMPLE 1
[Construction of plasmid pSW115]
(1) Construction of plasmid pTacll according to the procedure illustrated in FIG. 9
First of all, plasmids were extracted from E. coli MT 10414 (FERM BP-1712) carrying the plasmid pYtrp6 in which the structural gene for PAL derived from Rhodosporidium toruloides was cloned according to the procedures described in Reference Example. These plasmids were digested with the restriction endonucleases NruI and HindIII. From the resulting DNA fragment mixture, a DNA fragment having a size of 2.4 kb was separated and recovered by electrophoresis.
Separately, the plasmid pKK223-3 (a product of Pharmacia Co.) having the tac promoter was digested with the restriction endonuclease EcoRI to obtain a DNA fragment. Then, using DNA polymerase, the cohesive ends of this DNA fragment was converted to flush ends.
Thereafter, the flush-ended DNA fragment was digested with HindIII to obtain a DNA fragment having cohesive ends. This DNA fragment was reacted with the previously prepared 2.4 kb DNA fragment in the presence of a ligase. The resulting reaction product was introduced into E. coli MC 1061 according to the method of S. N. Cohen et al.
Subsequently, E. coli having the reaction product introduced thereinto was grown on an ampicillin plate prepared by adding 1.5% of agar to LB medium [composed of 10 g of Bacto-tryptone.RTM. (a product of Difco), 5 g of Bacto-yeast Extract.RTM. (a product of Difco), 1 g of glucose and 1 liter of distilled water and adjusted to pH 7.5 with NaOH] containing ampicillin at a concentration of 50 .mu.g/ml. After completion of the incubation, plasmids were extracted from each of the ampicillin-resistant colonies having appeared on the plate, and the restriction endonuclease cleavage map of each plasmid was constructed. Thus, the colonies containing the desired plasmid pTacll having the structure illustrated in FIG. 9 were identified, and the plasmid pTacll was isolated from these colonies.
(2) Construction of plasmid pP.sub.L -PAL-head according to the procedure illustrated in FIG. 10
The plasmid pP.sub.L -.lambda. (a product of Pharmacia Co.) was digested with the restriction endonucleases EcoRI and HpaI. From the resulting DNA fragment mixture, a DNA fragment of 470 bp was separated and recovered by electrophoresis. Then, this 470 bp DNA fragment was partially digested with the restriction endonuclease HinfI. From the resulting DNA fragment mixture, a DNA fragment of 370 bp was separated and recovered by electrophoresis.
Furthermore, the termini of this 370 bp DNA fragment were treated with DNA polymerase to generate flush ends, which were reacted with ClaI linkers (a product of Takara Shuzo K.K.) in the presence of a ligase. After completion of the reaction, the resulting reaction product was digested with the restriction endonucleases EcoRI and ClaI to obtain a mixture containing an EcoRI-ClaI DNA fragment.
Separately, the plasmid pSYA2, which had been constructed in the process of cloning of the structural gene for PAL of Rhodosporidium toruloides in the previously given Reference Example, was digested with the restriction endonuclease EcoRI. Furthermore, the resulting DNA fragment was partially digested with the restriction endonuclease ClaI. From the resulting mixture of two (large and small) DNA fragments, the large DNA fragment was extracted and separated by electrophoresis.
Then, this large DNA fragment derived from the plasmid pSYA2 was reacted with the previously prepared mixture containing an EcoRI-ClaI fragment, in the presence of T.sub.4 ligase. The resulting reaction products were introduced into E. coli MC1061, which was grown on an ampicillin plate. Then, plasmids were prepared from each of the colonies having appeared on the plate, and their restriction endonuclease cleavage maps were constructed. Thus, the colonies containing the desired plasmid pSYP.sub.L -3 having the structure illustrated in FIG. 10 were identified, and the plasmid pSYP.sub.L -3 was isolated from these colonies. Thus, a transformed E. coli strain carrying plasmid pSYP.sub.L -3 capable of producing PAL was isolated and named MT-10424 (FERM BP-1714).
Furthermore, the plasmid pSYP.sub.L -3 thus obtained was digested with EcoRI and BamHI. From the resulting mixture of two (large and small) DNA fragments, the small DNA fragment was separated and recovered by electrophoresis.
Separately, the plasmid pBR322 (a product of Pharmacia Co.) was digested with the restriction endonucleases EcoRI and BamHI. From the resulting mixture of two (large and small) DNA fragments, the large DNA fragment was separated and recovered by electrophoresis. Then, this large DNA fragment was reacted with the small fragment previously prepared from the plasmid pSYP.sub.L -3, in the presence of a ligase. Thus, there was obtained a plasmid pP.sub.L -PAL-head having the structure illustrated in FIG. 10. In order to confirm that the desired plasmid was obtained, the reaction product resulting from the aforesaid reaction in the presence of a ligase was introduced into E. coli MC 1061, which was grown on an ampicillin plate. Then, plasmids were prepared from each of the colonies having appeared on the plate, and their restriction endonuclease cleavage maps were constructed.
(3) Construction of plasmid pSW115 according to the procedure illustrated in FIG. 12
First of all, the plasmid pTacll obtained in Section (1) above was digested with the restriction endonucleases EcoRI and AatI. From the resulting mixture of two (large and small) DNA fragments, the large DNA fragment was separated and recovered by electrophoresis.
Then, the plasmid pP.sub.L -PAL-head obtained in Section (2) above was digested with the restriction endonucleases EcoRI and AatI. From the resulting mixture of two (large and small) DNA fragments, the small DNA fragment was separated and recovered by electrophoresis.
Finally, the aforesaid large DNA fragment derived from the plasmid pTacll was joined to the aforesaid small DNA fragment derived from the plasmid pP.sub.L -PAL-head, by reacting them in the presence of T.sub.4 ligase. Thus, there was obtained a plasmid pSW115.
In order to confirm that the desired plasmid was obtained, the plasmid produced by the aforesaid reaction was introduced into E. coli MC 1061 and the resulting transformants were selected on an ampicillin plate. Then, plasmids were prepared from the respective transformants and their restriction endonuclease cleavage maps were constructed. At the same time, these transformants were tested for PAL activity according to the procedure described later. Thus, a transformed E. coli strain carrying plasmid pSW115 having PAL activity was obtained and named MT-10423 (FERM BP-1714).
(4) Expression of PAL by use of plasmid pSW115
The transformed strain of E. coli obtained in Section (3) above, into which the plasmid pSW115 had been introduced, was inoculated into a culture medium prepared by adding ampicillin to LB medium (pH 7.5), as previously used in the preparation of ampicillin plate, so as to give a concentration of 50 .mu.g/ml. The inoculated medium was shaken at 30.degree. C.
After 20 hours' incubation, the culture exhibited such a cell concentration as to give an optical density (O.D.) of 5.40 at 660 nm. Thus, cells were collected from the culture by centrifugation and then tested for PAL activity according to the procedure described below. The specific activity per unit weight of dry cells was calculated and the result is shown in Table 2.
Determination of PAL activity:
Cells were collected from the culture by centrifugation. The collected cells were washed by suspending them in 0.85% saline and centrifuging the resulting suspension. Then, the washed cells were suspended in a 25mM Tris-HCl buffer solution (pH 8.8) so as to give a cell concentration of 1% on a wet weight basis. This suspension was added to an enzymatic reaction medium comprising a 25mM Tris-HCl buffer solution (pH 8.8) containing 25mM L-phenylalanine and 0.005% cetyl pyridinium hydrochloride. The resulting reaction mixture was incubated at 30.degree. C. for 20 minutes. After the reaction was stopped by the addition of 1N HCl, the cinnamic acid formed in the reaction mixture was analyzed by liquid chromatography. Thus, the PAL activity was determined in terms of units. One unit (U) corresponds to the amount of the enzyme which forms 1 micromole of cinnamic acid in a minute.
The dry cell weight used to obtain the data shown in Table 2 was determined by drying a sample of the washed cells and then weighing it.
Comparative Example 1
[Construction of plasmid pSW116 according to the procedure illustrated in FIGS. 11 and 12 and expression of PAL in E. coli by use of it]
(1) Construction of plasmid pSW108
First of all, the plasmid pSW13, which had been constructed in the process of cloning of the structural gene for PAL of Rhodosporidium toruloides as described in Reference Example, was digested with the restriction endonucleases HindIII and EcoRI. From the resulting DNA fragment mixture, a DNA fragment having a size of 2.3 kb was separated and recovered by electrophoresis. Then, the termini of this DNA fragment were treated with DNA polymerase to generate flush ends.
Separately, the plasmid pPL-.lambda. (a product of Pharmacia Co.) was digested with the restriction endonuclease HpaI. The resulting DNA fragment was subjected to CIP treatment for the prevention of self-recombination according to the procedure of Maniatis et al. [T. Maniatis et al., "Molecular Cloning", a laboratory manual, 133, Cold Spring Harbor, New York (1982)]. Thereafter, this DNA fragment was reacted with the 2.3 kb DNA fragment previously prepared from the plasmid pSW13, in the presence of a ligase. After completion of the reaction, the resulting reaction product was introduced into E. coli MC 1061, which was grown on an ampicillin plate. Then, plasmids were prepared from each of the ampicillin-resistant colonies having appeared on the plate, and the restriction endonuclease cleavage map of each plasmid was constructed. Thus, the colonies containing the desired plasmid pSW108 having the structure illustrated in FIG. 11 were identified, and the plasmid pSW108 was isolated from these colonies.
(2) Construction of plasmid pP.sub.L -[E]
The plasmid pP.sub.L -.lambda. (a product of Pharmacia Co.) was cleaved by digestion with the restriction endonuclease EcoRI. The termini of the resulting DNA fragment were treated with DNA polymerase to generate flush ends. Thereafter, this DNA fragment was cyclized with a ligase to obtain a plasmid pP.sub.L -[E].
(3) Construction of plasmid pSW113
First of all, the plasmid pP.sub.L -.lambda. (a product of Pharmacia Co.) was digested with the restriction endonucleases EcoRI and HpaI. From the resulting DNA fragment mixture, a DNA fragment of 470 bp was separated and recovered by electrophoresis. Then, this 470 bp DNA fragment was digested with the restriction endonuclease HaeIII. The resulting reaction product was reacted with EcoRI linkers (a product of Takara Shuzo K.K.) in the presence of T.sub.4 ligase. Then, the resulting reaction product was treated with the restriction endonucleases EcoRI and BamHI to obtain a mixture of DNA fragments. From this mixture of DNA fragments, a DNA fragment of 240 bp was separated and recovered by electrophoresis.
Separately, the plasmid pSW108 obtained in Section (1) above was digested with the restriction endonucleases EcoRI and NruI. From the resulting DNA fragment mixture, a DNA fragment of 4.1 kb was separated and recovered by electrophoresis.
Furthermore, the plasmid pPL-[E] obtained in Section (2) above was digested with the restriction endonucleases BamHI and NruI. From the resulting DNA fragment mixture, a DNA fragment of 3.4 kb was separated and recovered by electrophoresis.
Finally, the three DNA fragments obtained in the above-described manner were reacted in the presence of T.sub.4 ligase The resulting reaction product was introduced into E. coli MC 1061, which was grown on an ampicillin plate. Then, plasmids were prepared from each of the ampicillin-resistant colonies having appeared on the plate, and their restriction endonuclease cleavage maps were constructed. At the same time, a portion of each colony was grown in the same manner as described in Example 1 and then tested for PAL activity. Thus, the colonies containing the desired plasmid pSW113 having the structure illustrated in FIG. 11 were identified, and the plasmid pSW113 was isolated from these colonies.
(4) Construction of plasmid pSW116
First of all, the plasmid pSW113 obtained in Section (3) above was digested with the restriction endonucleases EooRI and AatI. From the resulting mixture of two (large and small) DNA fragments, the large DNA fragment was separated and recovered by electrophoresis.
Separately, the plasmid pP.sub.L -PAL-head obtained in Section (3) of Example 1 was digested with the restriction endonucleases EcoRI and AatI. From the resulting mixture of two (large and small) DNA fragments, the small DNA fragment was separated and recovered by electrophoresis.
Then, the two DNA fragments separated and recovered in the above-described manner were joined together by reacting them in the presence of T.sub.4 ligase. Thus, there was obtained a plasmid pSW116 having the structure illustrated in FIG. 12.
In order to confirm that the desired plasmid was obtained, the restriction endonuclease cleavage map of the resulting plasmid was constructed and the resulting transformants were tested for PAL activity, in the same manner as described in Example 1.
(5) Expression of PAL by use of plasmid pSW116
The transformation of E. coli and the expression of PAL were carried out in the same manner as described in Section (4) of Example 1, except that the plasmid pSW116 obtained in Section (4) above was used. The specific activity of PAL so produced was calculated. The final cell concentration of the resulting culture of the transformed strain and the value of specific PAL activity are shown in Table 2.
COMPARATIVE EXAMPLE 2
[Construction of plasmid pSW117 and expression of PAL in E. coli by use of it]
As illustrated in FIG. 13, the plasmid pSW113 obtained in Section (3) of Comparative Example 1 was digested with the restriction endonucleases EcoRI and AatI. From the resulting mixture of two (large and small) DNA fragments, the large DNA fragment was separated and recovered by electrophoresis.
Separately, the plasmid pYtrp6 used in Section (1) of Example 1 was digested with the restriction endonucleases EcoRI and AatI. From the resulting mixture of two (large and small) DNA fragments, the small DNA fragment was separated and recovered by electrophoresis.
Then, the two DNA fragments separated and recovered in the above-described manner were joined together by reacting them in the presence of T.sub.4 ligase. Thus, there was obtained a plasmid pSW117 having the structure illustrated in FIG. 13.
In order to confirm that the desired plasmid was obtained, the restriction endonuclease cleavage map of the resulting plasmid was constructed and the resulting transformants were tested for PAL activity, in the same manner as described in Example 1.
Thereafter, the transformation of E. coli and the expression of PAL were carried out in the same manner as described in Section (4) of Example 1, except that the plasmid pSW117 obtained in the above-described manner was used. The specific activity of PAL so produced was calculated. The final cell concentration of the resulting culture of the transformed strain and the value of specific PAL activity are shown in Table 2.
COMPARATIVE EXAMPLE 3
[Construction of plasmid pSW118 and expression of PAL in E. coli by use of it]
As illustrated in FIG. 13, the plasmid pP.sub.L -PAL-head obtained in Section (2) of Example 1 was digested with the restriction endonucleases EcoRI and AatI. From the resulting mixture of two (large and small) DNA fragments, the small DNA fragment was separated and recovered by electrophoresis.
Separately, the plasmid pYtrp6 used in Section (1) of Example 1 was digested with the restriction endonucleases EcoRI and AatI. From the resulting mixture of two (large and small) DNA fragments, the large DNA fragment was separated and recovered by electrophoresis.
Then, the two DNA fragments separated and recovered in the above-described manner were joined together by reacting them in the presence of T.sub.4 ligase. Thus, there was obtained a plasmid pSW118 having the structure illustrated in FIG. 13.
In order to confirm that the desired plasmid was obtained, the restriction endonuclease cleavage map of the resulting plasmid was constructed and the resulting transformants were tested for PAL activity, in the same manner as described in Example 1.
Thereafter, the transformation of E. coli and the expression of PAL were carried out in the same manner as described in Section (4) of Example 1, except that the plasmid pSW118 obtained in the above-described manner was used. The specific activity of PAL so produced was calculated. The final cell concentration of the resulting culture of the transformed strain and the value of specific PAL activity are shown in Table 2.
In the above Example and Comparative Examples, the introduction of a recombinant plasmid in E. coli was carried out according to the method of S. N. Cohen et al. [S. N. Cohen et al., Proc. Natl. Acad. Sci. USA, 9, 2110 (1972)]. Unless otherwise specified, the treatment of plasmids or DNA fragments with a restriction endonuclease or endonucleases, ligase, T.sub.4 ligase or DNA polymerase and the preparation of plasmids from bacterial cells were carried out in the publicly-known manner. Unless otherwise specified, the restriction endonucleases, ligase, T.sub.4 ligase, linkers and DNA polymerase used were products of Takara Shuzo K.K.
Among the above-mentioned strains, those having an ATCC number have been deposited with the American Type Culture Collection, 12301 Parklawn Drive, Rockville, Md. 20852-1776, U.S.A.; that having an IFO number with the Fermentation Research Institute (Incorporated Foundation), 17-85, Juso-Motomachi 2-chome, Yodogawa-ku, Osaka City, Japan; and those having an FERM number with the Fermentation Research Institute of the Agency of Industrial Science and Technology, 1-3, Higashi 1-chome, Tsukuba-Shi, Ibaraki-Ken 305, Japan.
Those having an ATCC number and that having an IFO number are publicly available.
Those having an FERM number was deposited on the following date for patent purposes by the applicant.
FERM BP-1710 on July 4, 1986;
FERM BP-1712 on July 26, 1986;
FERM BP-1713 on Oct. 31, 1986; and
FERM BP-1714 on October 31, 1986.
Claims
What is claimed is:
1. A recombinant plasmid comprising: (a) a vector capable of replicating in Escherichia coli; (b) a combined promoter comprising the tac promoter and, the P.sub.L promoter of the lambda phage, said P.sub.L promoter being connected downstream of said tac promoter; and (c) a DNA sequence derived from Rhodosporidium toruloides coding for L-phenylalanine ammonia-lyase, said DNA sequence being operably linked to and inserted downstream of said combined promoter, whereby the two promoters constituting said combined promoter have the same directional property and the P.sub.L promoter is located upstream of said DNA sequence so as to have the directional property which permits transcription of said DNA sequence.
2. The recombinant plasmid of claim 1 wherein said L-phenylalanine ammonia-lyase has the following amino acid sequence: 1 10 Met Ala Pro Ser Leu Asp Ser Ile Ser His 11 20 Ser Phe Ala Asn Gly Val Ala Ser Ala Lys 21 30 Gln Ala Val Asn Gly Ala Ser Thr Asn Leu 31 40 Ala Val Ala Gly Ser His Leu Pro Thr Thr 41 50 Gln Val Thr Gln Val Asp Ile Val Glu Lys 51 60 Met Leu Ala Ala Pro Thr Asp Ser Thr Leu 61 70 Glu Leu Asp Gly Tyr Ser Leu Asn Leu Gly 71 80 Asp Val Val Ser Ala Ala Arg Lys Gly Arg 81 90 Pro Val Arg Val Lys Asp Ser Asp Glu Ile 91 100 Arg Ser Lys Ile Asp Lys Ser Val Glu Phe 101 110 Leu Arg Ser Gln Leu Ser Met Ser Val Tyr 111 120 Gly Val Thr Thr Gly Phe Gly Gly Ser Ala 121 130 Asp Thr Arg Thr Glu Asp Ala Ile Ser Leu 131 140 Gln Lys Ala Leu Leu Glu His Gln Leu Cys 141 150 Gly Val Leu Pro Ser Ser Phe Asp Ser Phe 151 160 Arg Leu Gly Arg Gly Leu Glu Asn Ser Leu 161 170 Pro Leu Glu Val Val Arg Gly Ala Met Thr 171 180 Ile Arg Val Asn Ser Leu Thr Arg Gly His 181 190 Ser Ala Val Arg Leu Val Val Leu Glu Ala 191 200 Leu Thr Asn Phe Leu Asn His Gly Ile Thr 201 210 Pro Ile Val Pro Leu Arg Gly Thr Ile Ser 211 220 Ala Ser Gly Asp Leu Ser Pro Leu Ser Tyr 221 230 Ile Ala Ala Ala Ile Ser Gly His Pro Asp 231 240 Ser Lys Val His Val Val His Glu Gly Lys 241 250 Glu Lys Ile Leu Tyr Ala Arg Glu Ala Met 251 260 Ala Leu Phe Asn Leu Glu Pro Val Val Leu 261 270 Gly Pro Lys Glu Gly Leu Gly Leu Val Asn 271 280 Gly Thr Ala Val Ser Ala Ser Met Ala Thr 281 290 Leu Ala Leu His Asp Ala His Met Leu Ser 291 300 Leu Leu Ser Gln Ser Leu Thr Ala Met Thr 301 310 Val Glu Ala Met Val Gly His Ala Gly Ser 311 320 Phe His Pro Phe Leu His Asp Val Thr Arg 321 330 Pro His Pro Thr Gln Ile Glu Val Ala Gly 331 340 Asn Ile Arg Lys Leu Leu Glu Gly Ser Arg 341 350 Phe Ala Val His His Glu Glu Glu Val Lys 351 360 Val Lys Asp Asp Glu Gly Ile Leu Arg Gln 361 370 Asp Arg Tyr Pro Leu Arg Thr Ser Pro Gln 371 380 Trp Leu Gly Pro Leu Val Ser Asp Leu Ile 381 390 His Ala His Ala Val Leu Thr Ile Glu Ala 391 400 Gly Gln Ser Thr Thr Asp Asn Pro Leu Ile 401 410 Asp Val Glu Asn Lys Thr Ser His His Gly 411 420 Gly Asn Phe Gln Ala Ala Ala Val Ala Asn 421 430 Thr Met Glu Lys Thr Arg Leu Gly Leu Ala 431 440 Gln Ile Gly Lys Leu Asn Phe Thr Gln Leu 441 450 Thr Glu Met Leu Asn Ala Gly Met Asn Arg 451 460 Gly Leu Pro Ser Cys Leu Ala Ala Glu Asp 461 470 Pro Ser Leu Ser Tyr His Cys Lys Gly Leu 471 480 Asp Ile Ala Ala Ala Ala Tyr Thr Ser Glu 481 490 Leu Gly His Leu Ala Asn Pro Val Thr Thr 491 500 His Val Gln Pro Ala Glu Met Ala Asn Gln 501 510 Ala Val Asn Ser Leu Ala Leu Ile Ser Ala 511 520 Arg Arg Thr Thr Glu Ser Asn Asp Val Leu 521 530 Ser Leu Leu Leu Ala Thr His Leu Tyr Cys 531 540 Val Leu Gln Ala Ile Asp Leu Arg Ala Ile 541 550 Glu Phe Glu Phe Lys Lys Gln Phe Gly Pro 551 560 Ala Ile Val Ser Leu Ile Asp Gln His Phe 561 570 Gly Ser Ala Met Thr Gly Ser Asn Leu Arg 571 580 Asp Glu Leu Val Glu Lys Val Asn Lys Thr 581 590 Leu Ala Lys Arg Leu Glu Gln Thr Asn Ser 591 600 Tyr Asp Leu Val Pro Arg Trp His Asp Ala 601 610 Phe Ser Phe Ala Ala Gly Thr Val Val Glu 611 620 Val Leu Ser Ser Thr Ser Leu Ser Leu Ala 621 630 Ala Val Asn Ala Trp Lys Val Ala Ala Ala 631 640 Glu Ser Ala Ile Ser Leu Thr Arg Gln Val 641 650 Arg Glu Thr Phe Trp Ser Ala Ala Ser Thr 651 660 Ser Ser Pro Ala Leu Ser Tyr Leu Ser Pro 661 670 Arg Thr Gln Ile Leu Tyr Ala Phe Val Arg 671 680 Glu Glu Leu Gly Val Lys Ala Arg Arg Gly 681 690 Asp Val Phe Leu Gly Lys Gln Glu Val Thr 691 700 Ile Gly Ser Asn Val Ser Lys Ile Tyr Glu 701 710 Ala Ile Lys Ser Gly Arg Ile Asn Asn Val 711 716 Leu Leu Lys Met Leu Ala ______________________________________
3. A strain of Escherichia coli which has been transformed with the recombinant plasmid of claim 2.
Patent Citations (4)
| Patent | Date | Inventor | Cited By |
|---|---|---|---|
| EPX152613 | 1987-05-01 | ||
| EPX260919 | 1988-03-01 | ||
| EPX279664 | 1988-08-01 | ||
| WOXWO88/02024 | 1988-03-01 |
Non-Patent Literature (3)
- Gilbert, H. J.; Clark, I. N.; Gibson, R. K.; Stephenson, J. R.; and Tully, M., "Molecular Cloning of the Phenylalanine Ammonia-Lyase Gene from Rhodosporidium Toruloides in Escherichia Coli K-12", Journal of Bacteriology, Jan. 1985, pp. 314-320.
- Anson, J. G.; Gilbert, H. J.; Oram, J. D.; and Minton, N. P., "Complete Nucleotide Sequence of the Rhodosporidium Toruloides Gene Coding for Phenylalanine Ammonia-Lyase", Gene 58(1987), 189-199.
- Gene, vol. 58, No. 2-3, 1987, pp. 189-199, Anson et al., "Complete Nucleotide Sequence of the Rhodosporidium toruloides gene . . .".