US 4,783,405 AGrant
Recombinant DNA Expression Vectors Useful in Bacillus and Other Host Cells
Issue Date:1988-11-08
•87 Claims
•7 Drawing Sheets
Abstract
Recombinant DNA expression vectors for use in Bacillus and other host cells are disclosed. The vectors comprise the veg promoter sequence of Bacillus subtilis, a novel ribosome binding site-containing sequence and a sequence that codes for a functional polypeptide. The ribosome binding site-containing sequence is synthesized in accordance with conventional procedures while the veg promoter sequence can be obtained from E. coli K12 JA221/pMS480 (NRRL B-15258). Various sequences that codes for functional polypeptides and method for their expression in Bacillus are also disclosed.
Metadata
Assignee
- Eli Lilly and Company
Inventors
- Steven Kovacevic
- James R. Miller
- Hansen M. Hsiung
Application Information
Application Number:US 6544371
Filing Date:1984-09-26
Priority Date:1983-01-18
Art Unit:185
Classifications
IPC:
C12P 2100C12N 1500C12N 120C12N 100C07H 2100
Field of Search:
435536935172.3;317;253;255;240;682711;27;29;41;45;74
Patent Drawings (7 sheets)
Description
The following examples further illustrate and detail the invention disclosed herein. Both an explanation of and the actual procedures for constructing the invention are described where appropriate.
EXAMPLE 1
Construction of Plasmid pOW10
A. Construction of the .about.0.38 kb EcoRI-SfaNI Fragment of Plasmid pMS480
1. Isolation of Plasmid pMS480
The bacterium E. coli K12 JA221/pMS480 (NRRL B-15258) was cultured in TY broth (1% tryptone, 0.5% yeast extract, 0.5% sodium chloride, pH 7) with 100 .mu.g./ml. of antibiotic ampicillin according to conven- tional-microbiological procedures. After 18 hours incubation, about 0.5 ml. of the culture was transferred to a 1.5 ml. Eppendorf tube and centrifuged for about 15 seconds. Unless otherwise indicated, all the manipulations were done at ambient temperature. The resultant supernatant was carefully removed with a fine-tip aspirator and the cell pellet was suspended in about 100 .mu.1. of freshly prepared lysozyme solution which contained 2 mg./ml. lysozyme, 50 mM glucose, 10 mM EDTA (ethylene diaminetetracetate) and 25 mM Tris-HCl (pH 8). After incubation at 0.degree. C. for 30 minutes, about 200 .mu.l. of alkaline SDS (sodium dodecyl sulfate) solution (.2N NaOH, 1% SDS) were added and then the tube was gently vortexed and maintained at 0.degree. C. for 5 minutes. Next, about 150 .mu.l. of 3M sodium acetate (prepared by dissolving 3 moles of sodium acetate in a minimum of water, adjusting the pH to 4.8 with glacial acetic acid and then adjusting the volume-to 1 1.) were added a DNA clot formed after the contents of the tube were mixed gently for a few seconds by inversion.
The tube was maintained at 0.degree. C. for 60 minutes and then centrifuged for 5 minutes to yield an almost clear supernatant. About 0.4 ml. of the supernatant was transferred to a second centrifuge tube to which 1 ml. of cold ethanol was added. After the tube was held at -20.degree. C. for 30 minutes, the resultant precipitate was collected by centrifugation (2 minutes) and the supernatant was removed by aspiration. The thus collected pellet was dissolved in 200 .mu.l. of 0.1M sodium acetate/0.05 M Tris-HCl (pH 8) and was reprecipitated by the addition of 2 volumes of cold ethanol. After 10 minutes at -20.degree. C., the precipitate was collected by centrifugation and constituted the desired plasmid pMS480 DNA.
2. EcoRI-SfaNI Digestion of Plasmid pMS480
About 5 .mu.l. (5 .mu.g.) of plasmid pMS480 (isolated in Example A-1) in TE buffer (10 mM Tris-HCl, pH 8., 1 mM EDTA), 5 .mu.l. DTT (100 mM Dithiothreitol), 5 .mu.l. (1000 .mu.g./ml.) BSA (bovine serum albumin), 25 .mu.l. water, 5 .mu.l. (5 New England Biolab units) EcoRI restriction enzyme* and 5 .mu.l. 10X reaction mix** were incubated at 37.degree. C. for about 1 hour. The reaction was terminated by incubation at 65.degree. C. for 10 minutes. Next, the reaction mixture was cooled on ice and then about 1.1 .mu.l. of 5 M NaCl, 4 .mu.l. water and 5 .mu.l. (5 New England Bio lab units) SfaNI restriction enzyme were added followed by a second incubation at 37.degree. C. for 1 hour. The reaction was terminated by incubation at 65.degree. C. for 10 minutes and then the reaction mixture was cooled on ice, extracted with each of phenol and chloroform:isoamyl alcohol (24:1) and then ethanol precipitated. The desired .about.0.38 kb EcoRI-SfaNI restriction fragments were conventionally separated and isolated by agarose gel electrophoresis (Maniatis et al., 1982, Molecular Cloning, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.). The desired .about.0.38 kb fragments were dissolved in about 30 .mu.l. of water.
B. Construction of the .about.4 kb EcoRI-NcoI Fragment of Plasmid pOW601
1. Isolation of Plasmid pOW601
Plasmid pOW601 is isolated from E. coli K12 JA221/pOW601 (NRRL B-15259). The strain was cultured and the plasmid was isolated in substantial accordance with the teaching of Example lA-1.
2. EcoRI-NcoI Digestion of Plasmid pOW601
The desired digestion is carried out in substantial accordance with the teaching of Example lA-2 except that plasmid pOW601, rather than plasmid pMS480, was used.
C. Construction of the DNA Fraqment ##STR4## wherein R is G and R.sup.1 is C
The desired construction involves the synthesis and 5' phosphorylation of oligonucleotides T.sub.1 and T.sub.2 shown below. ##STR5## Oligonucleotides T.sub.1 and T.sub.2 were used to construct the desired DNA fragment having an NcoI sticky terminus. The oligonucleotide synthesis was conventionally done by the modified phosphotriester method using fully protected deoxyribonucleotide building blocks.
The above synthesis is typified by the following procedure for fragment T.sub.1 as summarized in FIG. 3 of the accompanying drawings. Various nucleotide fragments that are used in the synthesis of T.sub.1 are numerically designated in the figure. The abbreviations employed are as follows: MSTe, mesitylenesulfonyltetrazole; BSA, benzene sulfonic acid; TLC, thin layer chromatography; HPLC, high performance liquid chromatography; DMT, 4,4'-dimethoxytrityl; CE, 2-cyanoethyl; R, p-chlorophenyl; Bz, benzoyl; (Y).sub.2 NH, diisopropylamine; iBu, isobutyryl; Py, pyridine; AcOH, acetic acid.
The fully protected deoxyribotetranucleotides 2 (312 mg., 0.15 mmol) and deoxyribodinucleotides 4 (50 mg., 0.017 mmol) are deblocked at the 5' hydroxyls by treatment with 2% BSA in 7:3 (v/v) chloroform/methanol (2 and 1 ml., respectively) for 10 minutes at 0.degree. C. Reactions are stopped by addition of saturated aqueous ammonium bicarbonate (2 ml.), extracted with chloroform (25 ml.), and washed with water (2x, 10 ml.). The organic layers are dried (magnesium sulfate), concentrated to small volumes (about 5 ml.), and precipitated by addition of petroleum ether (35.degree.-60.degree. C. fraction). The colorless precipitates are collected by centrifugation and dried in a dessicator in vacuo to give 6 and 8, respectively, each homogeneous by silica gel tlc (Merck 60 F254, chloroform/methanol, 9:1).
Tetramers 1 and 3 (400 mg., 0.17 mmol; 100 mg., 0.043 mmol) are converted into their phosphodiesters (5 and 6) by treatment with diisopropylamine/pyridine (1:5, v/v, 2 ml.) for 30 minutes at ambient temperature. The reaction mixture was then precipitated with the addition of anhydrous ether (20 ml.). Reagents are removed by centrifugation and decanting the supernatant. The residues are dried by evaporation with anhydrous pyridine. Dimer 8 (0.04 mmol) and tetramer 7 are combined with MSTe (65 mg., 0.25 mmol) in anhydrous pyridine (1 ml.) and the reaction mixture left at ambient temperature for two hours. TLC analysis shows that 95% of the dimer 8 has been converted into hexamer product (visualized by detection of the DMT group by spraying with 10% aqueous sulfuric acid and heating at 100.degree. C.). The reaction mixture is precipitated by addition of ether and the supernatant is decanted. The hexamer is deblocked at the 5' position with 2% BSA (8 ml.) as described above for dimer 4 and tetramer 2. The product (10) is purified on a silica gel column (Merck 60 H, 3.5.times.5 cm.) by step gradient elution with chloroform/methanol (98:2 to 95:5, v/v). Fractions containing product 10 are evaporated to dryness. Similarly, tetramer 5 is coupled to tetramer 6 and the fully protected product directly purified on silica gel. This latter compound is deblocked at the 3' end by diisopropylamine/pyridine as described above to give fragment 9.
Finally, octomer 9 and hexamer 10 are coupled in anhydrous pyridine (0.5 ml.) with MSTe (100 mg., 0.39 mmol) as the condensing agent. Upon completion (45 minutes, ambient temperature) the mixture is rotary evaporated and the residue chromatographed on silica gel. A portion of compound 11 (20 mg.) in pyridine (0.5 ml.) is completely deblocked by treatment with concentrated ammonium hydroxide (7 ml., 8 hours, 60.degree. C.) and subsequent treatment in 80% acetic acid (15 minutes, ambient temperature). After evaporation of acetic acid, the solid residue is dissolved in distilled water (2 ml.) and extracted with ethyl ether (3x, 2 ml.). The aqueous phase is concentrated to dryness and redissolved in 50% pyridine/water. The product was purified by preparative thin layer chromatography on PolyethyleneimineCellulose (PEI/UV.sub.254) plates (Narang S. A. et al., 1980, Methods in Enzymology 65:610) and then by HPLC on a reverse phase C-18 column (Waters). The sequence of 12 is confirmed by two-dimensional sequence analysis.
Next, oligonucleotide T.sub.2 was constructed. This was done in substantial accordance with the above synthesis protocol for oligonucleotide T.sub.1.
Ten microgram quantities of the resultant oligonucleotide T.sub.1 and T.sub.2 are quantitatively phosphorylated with [.gamma.-.sup.32 P]-ATP (New England Nuclear) in the presence of T.sub.4 polynucleotide kinase to give specific activities of approximately 1 Ci/mmol. Radiolabelled fragments are purified by 20% polyacrylamide/7M urea gel electrophoresis and sequences of the eluted fragments are verified by two-dimensional electrophoresis/homochromatography (Jay et al., 1974, Nucleic acids Res. 1:331) of partial snake venom digests. Fragments T.sub.1 and T.sub.2 are then conventionally annealed to form the desired DNA fragment.
D. Construction of Plasmid pOW10 by ligation of (1) the .about.0.38 kb EcoRI-SfaNI Fragment of Plasmid pMS480; (2) the .about.4 kb EcoRI-NcoI Fragment of Plasmid pOW601 and (3) the Synthetic DNA Fragment of Example 1C and Construction of E. coli K12 JA221/pOW10
About 8 .mu.l. (0.01 .mu.g.) of the .about.0.38 kb EcoRISfaNI fragment of plasmid pMS480, 8 .mu.l. (0.10 .mu.g.) of the .about.4 kb EcoRI-NcoI fragment of plasmid pOW601, 10 .mu.l. (0.7 .mu.g.) of the DNA fragment of Example 1C, 10 .mu.l. water, 4 .mu.l. (10 mM)ATP, 2.5 .mu.l. (100 mM) dithiothreitol (DTT), 5 .mu.l. ligation mix** and 2.5 .mu.l. T4 DNA ligase* (.about.2 New England Bio Lab Units) were incubated at 16.degree. C. for about 16 hours. The reaction was terminated by incubation at 65.degree. C. for 10 minutes and then, after cooling on ice, the resultant ligated mixture was used to transform E. coli K12 JA221 (NRRL B-15211), in substantial accordance with the transformation procedure of Lederberg and Cohen, 1974, J. Bacteriology 119:1072, on TY plates containing 10 .mu.g./ml. of antibiotic tetracycline. The resultant transformants were conventionally cultured and used for subsequent production and isolation of plasmid pOW10 in substantial accordance with the procedure of Example 1A. A restriction site map of plasmid pOW10 is shown in FIG. 1 of the accompanying drawings.
EXAMPLE 2
Construction of Plasmids pOW525 and pOW526 and E. coli K12 JA221/pOW525 and E. coli K12 JA221/pOW526
A. Isolation of Plasmid pHI-16
1. Culture of Bacillus subtilis MII112/pHI-16
A vegetative culture of Bacillus subtilis MI112/pHI-16 (NRRL B-12597) was conventionally prepared by plating on PAB agar (PAB* [Penassay broth] containing agar at 15 g./1. and chloramphenicol at 10 .mu.g./ml.). After the inoculated plate was incubated at 37.degree. C. for about 18 hours, a single colony was selected and used inoculating 500 ml. of sterilized PAB medium with 10 .mu.g./ml. chloramphenicol. The resultant inoculated broth was incubated at 37.degree. C. for about 18 hours afterwhich the resultant Bacillus subtilis MII12/pHI-16 cells were ready for harvest and subsequent isolation of plasmid DNA.
2. Plasmid Isolation
About 10 g. (wet wgt) of Bacillus subtilis MI112/pHI-16 cells were first harvested by centrifugation (10 minutes, 4.degree. C., 10,000 rpm), then washed in about 50 ml. TES (10 mM Tris (pH 8), 10 mM NaCl, 1 mM EDTA) and finally collected again by centrifugation. About 20 ml. TE buffer with 25% sucrose were added to the pellet followed by about 10 mg. of lysozyme in 250 .mu.l. water. The mixture was incubated at 37.degree. C. for about 30 minutes followed by the addition of about 100 units of RNase. The resultant mixture was again incubated at 37.degree. C. for 30 minutes and then, upon being made 1% and 1M with respect to SDS (sodium dodecyl sulfate) and sodium chloride respectively, the mixture was cooled in an ice bath for about 3 hours. After the lysate was centrifuged (30 minutes, 4.degree. C., 19,000 rpm), the supernatent was adjusted to 31.8 ml. with TE, and then 28.7 g. of cesium chloride and 0.4 ml. (10 mg./ml.) of ethidium bromide were added. A cesium chloride gradient was established by centrifuging at 49,500 rpm 16 hours. The plasmid band was collected and centrifuged at 55,000 rpm for 16 hours, then collected again, extracted thrice with equal volumes of isoamyl alcohol, dialyzed against dilute TE, ethanol precipitated, and resuspended in 400 .mu.l of TE. The resultant plasmid pHI-16 DNA was stored at 4.degree. C. for future use.
The kanamycin resistance gene is contained within the .about.0.74 kb HpaII fragment of plasmid pHI-16. Therefore, treatment with HpaII restriction enzyme followed by ligation results in a .about.3.9 kb plasmid, designated herein as pHI-18, which lacks the kanamycin resistance gene. A detailed procedure for constructing plasmid pHI-18 is described below.
B. Construction of Plasmid pHI-18
1. Partial HpaII Digestion of Plasmid pHI-16
About 5 .mu.l. (2.5 .mu.g.) of plasmid pHI-16 DNA, 1 .mu.l. (2 mg./ml.) BSA, 37 .mu.l. water, 2 .mu.l. of HpaII (containing 2 New England Bio Labs units) restriction enzyme, and 5 .mu.l. reaction mix* were incubated at 37.degree. C. for 1 hour. After the reaction was terminated by heating at 65.degree. C. for 10 minutes, the DNA was precipitated by adding 2 volumes of 95% ethanol. The resultant DNA precipitate was washed in 70% ethanol, dried in vacuo, suspended in 5 .mu.l. of TE buffer, and stored at 4.degree. C. for future use.
2. Ligation of Plasmid pHI-16 HpaII Digest
About 5 .mu.l of plasmid pHI-16 HpaII digest (prepared in Example 3B-1), 2 .mu.l T4 DNA ligase, and 43 .mu.l. ligation mix* were incubated at about 16.degree. C. for about 18 hours. The reaction was terminated by the addition of about 5 .mu.l of 3M sodium acetate and 150 .mu.l. of 95% ethanol. The desired DNA precipitate was washed in 70% ethanol, dried in vacuo, suspended in 10 .mu.l. of TE buffer, and stored at 4.degree. C. for future use.
C. Construction of Bacillus subtilis MI112/pHI-18
Bacillus subtilis MI112 can be obtained by conventionally culturing B. subtilis MI112/pHI-16 (NRRL B-12597) in the absence of chloramphenicol. The B. subtilis MI112/pHI-16 cells spontaneously lose the pHI-16 plasmid under the aforementioned culture conditions thus generating the desired chloramphenicol sensitive B. subtilis MI112 strain. Those skilled in the art will recognize and understand that sensitivity to chloramphenicol can be employed for testing and insuring that only B. subtilis MI112 cells that lack the plasmid are selected and used in the Bacillus transformation procedures herein disclosed.
About 50 ml. of sterile PAB was inoculated with Bacillus subtilis MI112 and incubated at 37.degree. C. until a cell density of 2.times.10.sup.8 cells/ml. was reached. The cells were then protoplasted, using sterile technique, by pelleting and then resuspending the cells in about 5 ml. of SMMP (equal volumes of each of 4x PAB and a solution comprising 1.0M sucrose, 0.04M maleic acid, and 0.04M MgCl.sub.2, pH adjusted to 6.5 with NaOH). Next, about 250 .mu.l. of lysozyme (20 mg./ml. in SMM [0.5M sucrose, 0.02M maleic acid, and 0.02M MgCl.sub.2, pH adjusted to 6.5 with NaOH]) were added using filter sterilization. The cells were incubated with gentle shaking at 37.degree. C. for about 2 hours. The resultant protoplasts were pelleted, washed with 5 ml. SMMP, and then resuspended in 5 ml. SMMP. Following centrifugation (25.degree. C., 12 minutes, 2,600 rpm), about 0.1 ml. of the protoplasts were transformed by adding about 20 .mu.l. of a 1:1 mixture comprising plasmid pHI-18 DNA and 2X SMM. About 1.5 ml. of PEG solution (40 g. PEG 6000 [polyethyleneglycol], 50 ml. 2X SMM, and water to 100 ml.) were then immediately added and, after about 2 minutes, 5 ml. of SMMP were also added. Next, the protoplasts were pelleted, suspended in 1 ml. of SMMP, and incubated at 30.degree. C. with gentle shaking for about 2 hours. Aliquots of the thus prepared suspension were plated on chloramphenicol containing DM3 regeneration medium which per liter had the following composition.
91 g. D-mannitol in 555 ml. deionized water containing 12 g. agar
10% Casamino acids 50 ml.
10% Yeast extract 50 ml.
20% Glucose 25 ml.
5% Dipotassium phosphate 100 ml.
1M MgCl.sub.2 20 ml.
10% Gelatin
10 mg Chloramphenicol
The D-mannitol, casamino acids and yeast extract were autoclaved together. The gelatin was added immediately after autoclaving and the remaining ingredients were added after the mixture had cooled. The medium had a final chloramphenicol concentration of 10 .mu.g./ml.
The resultant chloramphenicol resistant colonies were tested for kanamycin sensitivity. A chloramphenicol resistan and kanamycin sensitive colony was selected as the desired Bacillus subtilis MI112/pHI-18 strain. The strain was cultured and the identity further confirmed by conventional restriction enzyme and agarose gel electrophoretic analysis (Maniatis et al., 1982), of the constitutive plasmid.
D EcoRI Digestion of Plasmids pHI-18 and pOW10
About 4 .mu.l (3 .mu.g.) of pHI-18, 1 .mu.l. (1 .mu.g.) of pOW10, 5 .mu.l. water, 1 .mu.l. 10X EcoRI buffer and 1.5 .mu.l. (containing 5 New England Bio Lab units) EcoRI restriction enzyme were incubated at 37.degree. C. for 1.5 hours. After the reaction was terminated by incubation at 65.degree. C. for 10 minutes, the EcoRI-digested DNA was cooled on ice, ethanol precipitated and then dissolved in 30 .mu.l of water.
E. Ligation of the Plasmid pHI-18 and pOW10 EcoRI Digests and Construction of E. coli K12 JA221/pOW525 and E. coli K12 JA221/pOW526
About 30 .mu.l of the pHI-18 and pOW10 EcoRI digests, 4 .mu.l. (100 mM) 10X Dithiothreitol, 4 .mu.l. (10 mM) ATP, 4 .mu.l. 10X ligase buffer and 1 .mu.l. (containing 3 New England Bio Lab units) T4 DNA ligase were incubated at 16.degree. C. for about 4 hours. The reaction was terminated by incubation at 65.degree. C. for 10 minutes and then, after cooling on ice, the resultant ligated DNA was used to transform E. coli K12 JA221 (NRRL B-15211), in substantial accordance with the transformation procedure of Lederberg and Cohen (1974), on TY plates containing 10 .mu.g./ml. of tetracycline. The resultant transformants were conventionally cultured and used for subsequent production and isolation of plasmids pOW525 and pOW526 in substantial accordance with the procedure of Example 1A. Plasmids pOW525 and pOW526 can be conventionally identified and distinguished by restriction enzyme and agarose gel electrophoretic analysis (Maniatis et al., 1982). A restriction site map of each of plasmids pOW525 and pOW526 is presented in FIG. 1 of the accompanying drawings.
EXAMPLE 3
Construction of Bacillus subtilis MI112/pOW525 and B. subtilis MI112/pOW526
The desired constructions were made in substantial accordance with the procedure of Example 2C except that plasmids pOW525 and pOW526, rather than plasmid pHI-18, were used. The resultant Bacillus subtilis MI112/pOW525 and B. subtilis MI112/pOW526 chloramphenicol-resistant and kanamycin-sensitive transformant colonies are isolated, according to known procedures, and then conventionally identified by restriction enzyme and agarose gel electrophoretic analysis of the constitutive plasmids. The thus constructed transformants, useful for the subsequent production and isolation of plasmids pOW525 and pOW526, produce pre-proinsulin intracellularly and also secrete proinsulin into the culture medium. This was determined by in vitro assay of both cell lysates and the culture medium.
EXAMPLE 4
Construction of Plasmids pOW527 and pOW528 and E. coli K12 JA221/pOW527 and E. coli K12 JA221/pOW528
The desired constructions were made in substantial accordance with the teaching of Example 2 except that plasmid pBSl, rather than plasmid pHI-18, was used. Plasmid pBSl is constructed as outlined below.
A. Isolation of Plasmid pEL103
1. Culture of Streptomyces granuloruber No. A39912.13/pEL103
A vegetative inoculum of Streptomyces granuloruber No. A39912.13/pEL103 (NRRL 12549) was conventionally prepared by growing the strain under submerged aerobic conditions in 50 ml. of sterilized trypticase soy broth* at 35 g./1. in deionized water.
The trypticase soy broth inoculum was incubated for 48 hours at a temperature of 30.degree. C. After incubation, about 10 ml. of the inoculum was transferred to 500 ml. of the sterilized broth and was incubated for about 20 hours at 30.degree. C. The pH was not adjusted. After incubation, the Streptomyces granuloruber No. A39912.13/pEL103 cells were ready for harvest and subsequent isolation of plasmid DNA.
2. Plasmid Isolation
About 12 g. (wet wgt) of Streptomyces granuloruber No. A39912.13/pEL103 cells were centrifuged (10 minutes, 4.degree. C., 10,000 rpm), washed in 10% glycerol, and then harvested by recentrifugation under the aforementioned conditions. About 50 ml. of TES buffer (0.01M Tris(hydroxymethyl)aminoethane [Tris], 0.001M EDTA, 34% sucrose, pH 8) were added to the cells followed by about 0.25 g. of lysozyme in 10 ml. of 0.25M EDTA. After the mixture was incubated at 37.degree. C. for about 15 minutes, about 0.5 ml. of 10% Triton X-100 in TE buffer (0.01M Tris, 0.001M EDTA, pH 8) was added. The resultant mixture was then incubated at 65.degree. C. for about 15 minutes. After the lysate was centrifuged (45 minutes, 4.degree. C., 18,000 rpm), the supernatant was extracted four times with isoamyl alcohol and once with a chloroformisoamyl alcohol solution (24:1). Next, 0.1 volume of 3M sodium acetate was added to the aqueous phase followed by 3 volumes of cold (-20.degree. C.) 95% ethanol. The ethanol precipitation was rapidly performed in a dry ice-ethanol bath and the DNA precipitate was collected by centrifugation (15 minutes, 4.degree. C., 10,000 rpm). The precipitate was vacuum dried and then resuspended in 1.1 ml. of STE buffer (0.01M Tris, 0.001M EDTA, 0.01M sodium chloride). Centrifugation (40 hours, 15.degree. C., 35,000 rpm) using cesium chloride gradients, with ethidium bromide, was carried out to purify the plasmid DNA. Following centrifugation, the desired plasmid pEL103 DNA band was removed and the ethidium bromide extracted by conventional procedures. After precipitation of the DNA in 3 volumes of ethanol, the thus isolated plasmid pEL103 DNA was dissolved in 1 ml. of 10 fold diluted TE buffer and was then stored at -20.degree. C.
B. Construction of Plasmid pLR2
1. HindIII Digestion of Plasmid pIJ6
About 20 .mu.l (20 .mu.g.) of plasmid pIJ6 DNA, disclosed in Thompson et al., 1980, Nature 286:525, 5 .mu.l BSA (Bovine Serum albumin, 1 mg./ml.), 19 .mu.l. water, 1 .mu.l. of HindIII (containing 3 New England Bio Labs units) restriction enzyme, and 5 .mu.l. reaction mix* were incubated at 37.degree. C. for 2 hours. The reaction was terminated by the addition of about 50 .mu.l. of 4M ammonium acetate and 200 .mu.l. of 95% ethanol. The resultant DNA precipitate was washed twice in 70% ethanol, dried in vacuo, suspended in 20 .mu.l. of TE buffer, and stored at -20.degree. C.
2. HindIII Digestion of Plasmid pBR322
About 8 .mu.l (4 .mu.g.) of plasmid pBR322 DNA*, 5 .mu.l reaction mix, 5 .mu.l BSA (1 mg./ml.), 31 .mu.l. and 1 .mu.l. of HindIII restriction enzyme were incubated at 37.degree. C. for 2 hours. After the reaction was terminated by incubating at 60.degree. C. for 10 minutes, about 50 .mu.l. of 4M ammonium acetate and 200 .mu.l. of 95% ethanol were added. The resultant DNA precipitate was washed twice in 70% ethanol, dried in vacuo, and suspended in 45 .mu.l. of water.
3. Ligation of HindIII Digested Plasmids pIJ6 and pBR322
About 20 .mu.l of HindIII treated plasmid pIJ6, 20 .mu.l of HindIII treated plasmid pBR322, 5 .mu.l BSA (1 mg./ml.), 1 .mu.l. of T4 DNA ligase, and 5 .mu.l. ligation mix* were incubated at 16.degree. C. for 4 hours. The reaction was terminated by the addition of about 50 .mu.l. 4M ammonium acetate and 200 .mu.l of 95% ethanol. The resultant DNA precipitate was washed twice in 70% ethanol, dried in vacuo, and suspended in TE buffer. The suspended DNA constituted the desired plasmid pLR2.
C. Construction of E. coli K12 HB101/pLR2
About 10 ml. of E. coli K12 HB101 cells (Bolivar et al., 1977, Gene 2:75-93) were pelleted by centrifugation and then suspended in about 10 ml. of 0.01M sodium chloride. Next, the cells were pelleted again, resuspended in about 10 ml. of 0.03M calcium chloride, incubated on ice for 20 minutes, pelleted a third time, and finally, resuspended in 1.25 ml. of 0.03M calcium chloride. The resultant cell suspension was competent for subsequent transformation.
Plasmid pLR2 in TE buffer was ethanol precipitated, suspended in 150 .mu.l of 30 mM calcium chloride solution, and gently mixed in a test tube with about 200 .mu.l. of competent E. coli K12 HB101 cells. The resultant mixture was incubated on ice for about 45 minutes and then at 42.degree. C. for about 1 minute. Next, about 3 ml. of L-broth (Bertani, 1951, J. Bacteriology 62:293) containing 50 .mu.g./ml. of ampicillin was added. The mixture was incubated with shaking at 37.degree. C. for 1 hour and then plated on L-agar (Miller, 1972, Experiments in Molecular Genetics, Cold Spring Harbor Labs, Cold Spring Harbor, N.Y.) containing ampicillin. Surviving colonies were selected and tested for the expected phenotype (Amp.sup.R, Tet.sup.S), and constituted the desired E. coli K12 HB101/pLR2 transformants.
D. Construction of Plasmids pEL107 and pEL105
1. BamHI Digestion of Plasmid pLR2 and Isolation of the .about.1.6 kb Thiostrepton Resistance-Conferring Fragment
About 50 .mu.g. of plasmid pLR2 DNA, 10 .mu.l. reaction mix, 10 .mu.l. BSA (1 mg./ml.), 29 .mu.l. water, and 1 .mu.l. (4 units/.mu.l.) of BamHI restriction enzyme were incubated at 37.degree. C. for 2 hours. After adding an equal volume of 4M ammonium acetate and 2.5 volumes of 95% ethanol, the mixture was cooled at -20.degree. C. for about 18 hours to precipitate the DNA. The DNA precipitate was collected by centrifugation and then suspended in about 50 .mu.l. of TE buffer. The desired .about.1.6 kb BamHI restriction fragment was isolated conventionally from the DNA suspension by agarose gel electrophoresis (Maniatis et al. 1982). Following isolation, the fragment was resuspended in about 20 .mu.l. of TE buffer for subsequent ligation.
2. Partial BamHI Digestion of Plasmid pEL103
About 20 .mu.g. of plasmid pEL103 DNA, 10 .mu.l. reaction mix, 10 .mu.l. BSA (1 mg./ml.), 39 .mu.l. water, and 1 .mu.l. of BamHI restriction enzyme (prepared by diluting 2 .mu.l. of enzyme in 8 .mu.l. of water) were incubated at ambient temperature for about 15 minutes. After adding an equal volume of 4M ammonium acetate and 2 volumes of 95% ethanol, the mixture was cooled at -20.degree. C. for about 18 hours to precipitate the DNA. The DNA precipitate was collected by centrifugation, rinsed in 70% ethanol, dried in vacuo, and then suspended in about 50 .mu.l. of TE buffer.
3. Ligation
A mixture of about 20 .mu.g. of the partially digested plasmid pEL103 DNA, 10 .mu.g. of the .about.1.6 kb BamHI restriction fragment of plasmid pLR2, 5 .mu.l. ligation mix, 5 .mu.l. BSA (1 mg./ml.), 10 .mu.l. water, and 1 .mu.l. T4 DNA ligase were incubated at about 16.degree. C. for about 4 hours. After adding 40 .mu.l. of 4M ammonium acetate and 200 .mu.l. of cold ethanol, the mixture was cooled to -20.degree. C. for about 18 hours to precipitate the DNA. The DNA precipitate was collected by centrifugation, washed with 70% ethanol, collected again, and then suspended in 50 .mu.l. of medium P (Hopwood and Wright 1978,Molecular and General Genetics 162:307) for subsequent transformation.
Recombinant plasmids of various types result depending upon which of the possible pEL103 restriction fragments becomes ligated to the .about.1.6 kb BamHI thiostrepton resistance-conferring fragment. Ligation to the .about.2.8 kb BamHI restriction fragment of plasmid pEL103 results in the desired .about.4.4 kb plasmids pEL107 and pEL105. Recombinant plasmids of two orientations result because the .about.1.6 kb BamHI resistance-conferring fragment can be oriented in either direction. A restriction site and functional map of each of plasmids pEL107 and pEL105 is presented in FIG. 4 of the accompanying drawings.
Construction of Streptomyces ambofaciens/pEL107 and S. ambofaciens/pEL105
Using about 20 .mu.g. of the DNA from Example 4D-3 and 1X10.sup.8 protoplasts (prepared according to Baltz, 1978, J. of General Microbiology 107:93) of Streptomyces ambofaciens, a strain deposited and made part of the permanent stock culture collection of the Northern Regional Research Laboratory, Peoria, Ill., from which it is available to the public under the accession number NRRL 2420, the desired constructions were made in substantial accordance with the teaching of International Publication (of International Patent Application No. PCT/GB79/00095) No. W079/01169, Example 2. The desired transformants were selected for thiostrepton resistance by overlaying the regenerating protoplasts with modified R2 medium (Baltz, 1978, J. of General Microbiology 107:93) top agar containing sufficient thiostrepton to bring the final plate concentration to 50 .mu.g./ml. The resultant Streptomyces ambofaciens/pEL107 and S. ambofaciens/pEL105 thiostrepton resistant colonies were isolated according to known procedures, cultured, and then identified by restriction enzyme and gel electrophoretic analysis (Maniatis et al., 1982), of the constitutive plasmids.
Accordingly, vegetative inocula (10 ml.) of different isolated colonies are conventionally prepared by inoculating trypticase soy broth containing sufficient thiostrepton to bring the final concentration to 50 .mu.g./ml. Several inocula are prepared and the following procedure performed until all the desired transformant types and constitutive plasmids are isolated. Thus, after cells are incubated at 30.degree. C. until fully grown, 6 ml. of the cell-containing broth are centrifuged. The resultant pellet is washed in TE buffer, pelleted again, and then suspended in 400 .mu.l. 50 mM Tris, pH 8.0. Next, about 80 .mu.l. of 0.25M EDTA, 20 .mu.l. RNase, and 100 .mu.l. (10 mg./ml. in TE) lysozyme are added. After the mixture is incubated at 37.degree. C. for about 15 minutes, about 10 .mu.l. of 10% Triton X-100 and 150 .mu.l. 5M NaCl are added followed by a final incubation at 60.degree. C. for 15 minutes. The resultant lysate is centrifuged (15 minutes, 4.degree. C., 15,000 rpm) and then the supernatant is conventionally extracted twice with phenol, once with a chloroform-isoamyl alcohol solution (24:1), and then ethanol precipitated. The identity of the constitutive plasmids and thus the transformants are determined conventionally by restriction enzyme and agarose gel electrophoretic analysis (Maniatis et al., 1982). Plasmid pEL105 was conventionally isolated for subsequent construction of plasmid pBS1.
F. Construction of Plasmids pBS1 and pBS3
1. Partial BamHI Digestion of Plasmid pEL105
About 10 .mu.l. (5 .mu.g.) of plasmid pEL105 (conventionally isolated from Streptomyces ambofaciens/-pEL105 [prepared in Example 4E]in substantial accordance with the teaching of Example 4A-1), 2 .mu.l. BSA (1 mg./ml.), 29 .mu.l. water, 1 .mu.l. of BamHI (diluted 1:4 water) restriction enzyme, and 5 .mu.l. reaction mix were incubated at 25.degree. C. for 15 minutes. The reaction was terminated by the addition of about 50 .mu.l. of 4M ammonium acetate and 300 .mu.l. of 95% ethanol. After cooling at -20.degree. C. for about 2 hours, the resultant DNA precipitate was collected by centrifugation, washed twice in 70% ethanol, dried in vacuo, and then suspended in about 10 .mu.l. of TE buffer. Because plasmid pEL105 has two BamHI restriction sites, a mixture of different fragments results.
2. Bam Digestion of Plasmid pHI-18
About 5 .mu.l. (5 .mu.g.) of plasmid pHI-18, 2 .mu.l. BSA (1 mg./ml.), 9 .mu.l. water, 1 .mu.l. of BamHI (4 units/-.mu.l.) restriction enzyme, and 1.5 .mu.l. reaction mix were incubated at 37.degree. C. for about 2 hours. After adding an equal volume of 4M ammonium acetate and 2.5 volumes of 95% ethanol, the mixture was cooled at -20.degree. C. for about 18 hours to precipitate the DNA. The DNA precipitate was collected by centrifugation, washed in 70% ethanol, and then suspended in about 10 .mu.l. of TE buffer.
3. Ligation
About 5 .mu.l. of BamHI-digested plasmid pHI-18, 8 .mu.l. of plasmid pEL105 BamHI partial digest, 27 .mu.l. water, 5 .mu.l. (4 mM) ATP, 5 .mu.l. ligation mix, and 2 .mu.l. T4 DNA ligase were incubated at 16.degree. C. for about 18 hours. The reaction was terminated by the addition of 50 .mu.l. 4M ammonium acetate and 200 .mu.l. of 95% ethanol. After incubation at -20.degree. C. for about 2 hours, the desired plasmid pBS1 and pBS3 DNA precipitate was collected by centrifugation, washed in 70% ethanol, dried in vacuo, suspended in 10 .mu.l. of TE buffer, and stored at 4.degree. C. for future use.
Since plasmid pEL105 has two BamHI restriction sites, a partial BamHI digest results in two .about.4.4 kb BamHI fragments. Therefore, the insertional isomers of plasmids pBS1 and pBS3 are also produced by the above procedure. Recombinant plasmids of two orientations result because the BamHI restricted DNA can be ligated in either direction. A restriction site and functional map of each of plasmids pBS1 and pBS3 is presented in FIG. 5 of the accompanying drawings.
G. Construction of Bacillus subtilis MI112/pBS1 and B. subtilis MI112/pBS3
The desired constructions were made in substantial accordance with the procedure of Example 2C except that plasmids pBS1 and pBS3, rather than plasmid pHI-18, were used. The resultant Bacillus subtilis MI112/pBS1 and B. subtilis MI112/pBS3 chloramphenicol resistant and kanamycin sensitive transformant colonies were isolated according to known procedures, cultured and then conventionally identified by restriction enzyme and agarose gel electrophoretic analysis (Maniatis et al., 1982), of the constitutive plasmids. Bacillus subtilis MI112/pBS1 was selected and cultured for subsequent isolation of plasmid pBS1.
H. Final Construction of Plasmids pOW527 and pOW528 and E. coli K12 JA221/pOW527 and E. coli K12 JA221/pOW528
The desired plasmids pOW527 and pOW528 and transformants E. coli K12 JA221/pOW527 and E. coli K12 JA221/pOW528 were constructed in substantial accordance with the procedure of Example 2 except that plasmid pBS1, rather than plasmid pHI-18, was used. Recombinant plasmids of two orientations result because the EcoRI-restricted DNA can be ligated in either direction. A restriction site map of each of plasmids pOW527 and pOW528 is presented in FIG. 1 of the accompanying drawings.
EXAMPLE 5
Construction of Bacillus subtilis MI112/pOW527 and B subtilis MII12/pOW528
The desired constructions are made in substantial accordance with the teaching of Example 2C except that plasmids pOW527 and pOW528, rather than plasmid pHI-18, are used. The resultant Bacillus subtilis MI112/pOW527 and B. subtilis MI112/pOW528 chloramphenicol resistant and kanamycin sensitive transformant colonies are isolated, according to known procedures, and then conventionally identified by restriction enzyme and agarose gel electrophoretic analysis (Maniatis et al., 1982), of the constitutive plasmids. The thus constructed transformants, useful for the subsequent production and isolation of plasmids pOW527 and pOW528, produce pre-proinsulin intracellularly and also secrete proinsulin into the culture medium. This was determined by in vitro assay of both cell lysates and the culture medium.
EXAMPLE 6
Construction of Plasmid pOW303 and E. coli K12 BE904/ pOW303
A. NcoI Digestion of Plasmid pOW10
About 2 .mu.l. (2 .mu.g.) of plasmid pOW10 (prepared in Example 1D), in TE buffer, 2.5 .mu.l. (100 mM) DTT, 0.5 .mu.l. (1000 .mu.g./ml.) BSA, 17 .mu.l. water, 1 .mu.l. (containing 4 New England Bio Lab Units) NcoI restriction enzyme and 2.5 .mu.l. 10X reaction mix* were incubated at 37.degree. C. for 1.5 hours. After the reaction was terminated by incubation at 65.degree. C. for 10 minutes, the digested DNA was ethanol precipitated and then dissolved in 34.5 .mu.l. of water.
B. BamHI Digestion of Plasmid pMC1403
The desired digestion was carried out in substantial accordance with the teaching of Example 6A except that plasmid pMC1403 and BamHI restriction enzyme and reaction mix, rather than plasmid pOW10 and NcoI restriction enzyme and reaction mix, were used. Plasmid pMC1403 was isolated from E. coli K12 BE904/pMC1403 (NRRL B-15213) in substantial accordance with the teaching of Example 1A-1. The digested DNA was ethanol precipitated and then dissolved in 34.5 .mu.l. of water.
C. Klenow Fill-in of NcoI-Digested Plasmid pOW10 and BamHI-Digested Plasmid pMC1403
The NcoI and BamHI digests of Examples 6A and 6B were combined (69 .mu.l.) and then incubated with 4 .mu.l. each of dATP, dGTP, dCTP and TTP, 5 .mu.l. (containing 10 units of DNA polymerase I large (Klenow) fragment* and 10 .mu.l. of 10X Klenow buffer (0.5M Tris-HCl, pH 7.2, 0.1M MgSO.sub.4, 1 mM DTT) at 16.degree. C. for 30 minutes. After the reaction was terminated by incubation at 65.degree. C. for 10 minutes, the DNA was ethanol precipitated, extracted once with phenol and twice with chloroform:isoamyl alcohol (24:1) and then ethanol precipitated again. The Klenow filled-in DNA was dissolved in 20 .mu.l. of water for subsequent EcoRI digestion.
D. EcoRI Digestion of the Klenow Filled-In NcoI and BamHI Fragments
About 20 .mu.l. (4 .mu.g.) of the Klenow filledin DNA, 5 .mu.l. (100 mM) DTT, 5 .mu.l. (1000 mg./ml.) BSA, 2 .mu.l. (containing 10 New England Bio Lab Units) EcoRI restriction enzyme and 5 .mu.l. (10X) reaction mix were incubated at 37.degree. C. for 1 hour and then at 65.degree. C. for 10 minutes. The resultant EcoRI-digested DNA was ethanol precipitated and then dissolved in 30 .mu.l. of water.
E. Ligation of the EcoRI-Digested Klenow Filled-In NcoI and BamHI Fragments and Construction of E coli K12 BE904/pOW303
About 30 .mu.l. of the EcoRI-digested Klenow filled-in fragments, 4 .mu.l. (100 mM) DTT, 4 .mu.l. (100 mM) ATP, 4 .mu.l. 10X ligase buffer and 1 .mu.l. (containing 10 New England Bio Lab Units) T4 DNA ligase were incubated at 16.degree. C. for about 16 hours and then at 65.degree. C. for 10 minutes. After cooling on ice about 15 .mu.l. of the resultant ligated DNA, designated herein as plasmid pOW303, was used to transform E. coli K12 BE904 (NRRL B-15212). This was done in substantial accordance with the procedure of Example 1D except that plasmid pOW303, rather than plasmid pOW10, was used and 80 .mu.g./ml. of ampicillin was used instead of tetracycline. In addition, the TY plates contained 40 .mu.g./ml. of 5-bromo-4-chloro-3-indolyl-.beta.D-galactoside (x-gal) so that color could be used as a convenient assay of .beta.-galactosidase activity. The resultant blue and ampicillin-resistant transformants constituted the desired E. coli K12 BE904/pOW303. The transformants were cultured, using conventional microbiological techniques, and were used for subsequent production and isolation of plasmid pOW303 in substantial accordance with the procedure of Example 1A-1. A restriction site map of plasmid pOW303 is presented in FIG. 2 of the accompanying drawings.
EXAMPLE 7
Construction of Plasmids pOW523 and pOW524 and E. coliK12 BE904/pOW523 and E. coli K12 BE904/pOW524
The desired constructions were made in substantial accordance with the teaching of Examples 2D and 2E except that plasmid pOW303, rather than plasmid pOW10, and 80 .mu.g./ml. of ampicillin was used instead of tetracycline. In addition, the TY plates contained 40 .mu.g./ml. of x-gal so that color could be used as a convenient assay of .beta.-galactosidase activity. Recombinant plasmids of two orientations result because the EcoRI-restricted DNA can be ligated in either direction. A restriction site map of each of plasmids POW523 and pOW524 is presented in FIG. 2 of the accompanying drawings.
EXAMPLE 8
Construction of Bacillus subtilis MI112/pOW523 and B. subtilis MI112/pOW524
The desired constructions were made in substantial accordance with the teaching of Example 2C except that plasmids pOW523 and pOW524, rather than plasmid pHI-18, were used. In addition, the regeneration medium was modified so as to contain 40 .mu.g./ml. of x-gal so that color would be used as a convenience assay of .beta.-galactosidase activity. The resultant Bacillus subtilis MI112/pOW523 and B. subtilis MI112/pOW524 chloramphenicol-resistant and kanomycin-sensitive transformant colonies were isolated according to known procedures. The transformants produced dark blue colonies on x-gal-containing plates indicating that the gene that encoded the .beta.-galactosidase activity was in the correct translational reading phase for direct expression. This was further confirmed by in vitro assay, which showed the presence of .beta.-galactosidase activity in the transformants, and also by structural analysis of the plasmids. The desired B. subtilisMI112/pOW523 and B. substilis MI112/pOW524 transformants were cultured and then conventionally identified by restriction enzyme and agarose gel electrophoretic analysis (Maniatis et al., 1982), of the constitutive plasmids.
EXAMPLE 9
Construction of Plasmids pOW529 and pOW530 and E. coli K12 BE904/pOW529 and E. coli K12 BE904/pOW530
The desired constructions are made in substantial accordance with the teaching of Examples 2D and 2E except that plasmids pOW303 and pBS1, rather than plasmid pOW10 and pHI-18, are used and 80 .mu.g./ml. of ampicillin is used instead of tetracycline. In addition, the TY plates contain 40 .mu.g./ml. of x-gal so that color can be used as a convenient assay of .beta.-galactosidase activity. Recombinant plasmids of two orientations result because the EcoRI-restricted DNA can be ligated in either direction. A restriction site map of each of plasmids pOW529 and pOW530 is presented in FIG. 2 of the accompanying drawings.
EXAMPLE 10
Construction of Bacillus subtilis MI112/pOW529 and B. subtilis MI112/pOW530
The desired constructions are made in substantial accordance with the teaching of Example 8 except that plasmids pOW529 and pOW530, rather than plasmids pOW523 and pOW524, are used. The transformants produce dark blue colonies on x-gal containing plates indicating that the gene that encodes the .beta.-galactosidase activity is in the correct translational reading phase for direct expression. This is further confirmed by in vitro assay, which shows the presence of .beta.-galactosidase activity in the transformants, and also by structural analysis of the plasmids. The desired B. substilis MI112/pOW529 and B. substilis MI112/pOW530 transformants are cultured and then conventionally identified by restriction enzyme and agarose gel electrophoretic analysis (Maniatis et al., 1982), of the constitutive plasmids.
EXAMPLE 11
Construction of the DNA Fragment ##STR6## wherein R is C and R.sup.1 is G
The desired construction involves the synthesis and 5' phosphorylation of oligonucleotides T.sub.3 and T.sub.4 shown below. ##STR7## Oligonucleotides T.sub.3 and T.sub.4 were used to construct the desired DNA fragment having an NcoI sticky terminus adjacent to a BamHI restriction site. The oligonucleotide synthesis was conventionally done by the modified phosphotriester method using fully protected deoxyribonucleotide building blocks. The desired construction was made in substantial accordance with the teaching of Example 1C.
EXAMPLE 12
Construction of Plasmid pOW11 and E. coli K12 JA221/pOW11
The desired constructions are made in substantial accordance with the teaching of Example 1 except that the DNA fragment of Example 11, rather than the DNA fragment of Example 1C, is used. The restriction site map of plasmid pOW11 is the same, except for the aforementioned BamHI site, as that shown for plasmid pOW10 in FIG. 1 of the accompanying drawings.
EXAMPLE 13
Construction of Plasmids pOW531 and pOW532 and E. coliK12 JA221/pOW531 and E. coli K12 JA221/pOW532
The desired constructions are made in substantial accordance with the teaching of Example 2 except that plasmid pOW11, rather than plasmid pOW10, is used. The respective restriction site map of each of plasmids pOW531 and pOW532 is the same, except for the aforementioned additional BamHI site from the pOW11 fragment, as that shown for plasmids pOW525 and pOW526 in FIG. 1 of the accompanying drawings.
EXAMPLE 14
Construction of Bacillus subtilis MI112/pOW531 and Bacillus subtilis MI112/pOW532
The desired constructions are made in substantial accordance with the teaching of Example 3 except that plasmids pOW531 and pOW532, rather than plasmids pOW525 and pOW526, are used.
EXAMPLE 15
Construction of Plasmids pOW533 and pOW534 and E. coliJA221/pOW533 and E. coli K12 JA221/pOW534
The desired constructions are made in substantial accordance with the teaching of Example 4 except that plasmid pOW11, rather than plasmid pOW10, is used. The respective restriction site map of each of plasmids pOW533 and pOW534 is the same, except for the aforementioned additional BamHI site from the pOW11 fragment, as that shown for plasmids pOW527 and pOW528 in FIG. 1 of the accompanying drawings.
EXAMPLE 16
Construction of Bacillus subtilis MI112/pOW533 and Bacillus subtilis MI112/pOW534
The desired constructions are made in substantial accordance with the teaching of Example 5 except that plasmid pOW533 and pOW534, rather than plasmids pOW527 and pOW528, are used.
EXAMPLE 17
Construction of Plasmid pOW310 and E. coli K12 BE904/pOW310
The desired constructions are made in substantial accordance with the teaching of Example 6 except that plasmid pOW11, rather than plasmid pOW10, is used. The restriction site map of plasmid pOW310 is the same, except for the aforementioned additional BamHI site from the pOW11 fragment, as that shown for plasmid pOW303 in FIG. 2 of the accompanying drawings.
EXAMPLE 18
Construction of Plasmids pOW535 and pOW536 and E. coliK12 BE904/pOW535 and E. coli K12 BE904/pOW536
The desired constructions are made in substantial accordance with the teaching of Example 7 except that plasmid pOW310, rather than plasmid pOW303, is used. The restriction site map of each of plasmids pOW535 and pOW536 is the same, except for the aforementioned additional BamHI site from the pOW310 fragment, as that presented for plasmids pOW523 and pOW524 in FIG. 2 of the accompanying drawings.
EXAMPLE 19
Construction of Bacillus subtilis MI112/pOW535 and Bacillus subtilis MI112/pOW536
The desired constructions are made in substantial accordance with the teaching of Example 8 except that plasmids pOW535 and pOW536, rather than plasmids pOW523 and pOW524, are used.
EXAMPLE 20
Construction of Plasmids pOW537 and pOW538 and E. coliK12 BE904/pOW537 and E. coli K12 BE904/pOW538
The desired constructions are made in substantial accordance with the teaching of Example 9 except that plasmid pOW310, rather than plasmid pOW303, is used. The restriction site map of each of plasmids pOW537 and pOW538 is the same, except for the aforementioned additional BamHI site from the pOW310 fragment, as that presented for plasmids pOW529 and pOW530 in FIG. 2 of the acccmpanying drawings.
EXAMPLE 21
Construction of Bacillus subtilis MI112/pOW537 and Bacillus subtilis MI112/pOW538
The desired constructions are made in substantial accordance with the teaching of Example 10 except that plasmid pOW537 and pOW538, rather than plasmids pOW529 and pOW530, are used.
EXAMPLE 22
Construction of Plasmid pOW323/Z and E. coli K12 JA221/pOW323/Z
A. Isolation of Plasmid pOW440
The bacterium Bacillus subtilis MI112/pOW440 (NRRL B-15887) was cultured and plasmid pOW440 isolated in substantial accordance with the teaching of Example 2. The desired plasmid pOW440 was dissolved in TE buffer and stored at 0.degree. C. for future use.
B. Sau3A Digestion of Plasmid pOW440 and Isolation of the .about.518 bp (base pair) Fragment
The desired digestion was carried out in substantial accordance with the teaching of Example 6A except that plasmid pOW440 and Sau3A restriction enzyme and reaction mix*, rather than plasmid pOW10 and NcoI restriction enzyme and reaction mix, were used. The desired .about.518 bp fragments were conventionally separated and isolated by agarose gel electrophoresis (Maniatis et al., 1982), dissolved in 20 .mu.l. of TE and stored at 0.degree. C. for future use.
C. BamHI Digestion of Plasmid pOW303
Plasmid pOW303 (prepared in Example 6) was digested in substantial accordance with the teaching of Example 6A except that plasmid pOW303 and BamHI restriction enzyme and reaction mix, rather than plasmid pOW10 and NcoI restriction enzyme and reaction mix, were used. The desired plasmid pOW303 digest was ethanol precipitated and dissolved in 10 .mu.l. of TE.
D. Ligation and Transformation
About 2 .mu.l. (0.1 .mu.g.) of the .about.518 bp Sau3A fragments of plasmid pOW440 and 1 .mu.l. (0.5 .mu.g.) of the BamHI digest of plasmid pOW303 were ligated in substantial accordance with the teaching of Example 6E. The resultant ligated DNA was used to transform E. coliK12 JA221 in substantial accordance with the procedures of Lederburg and Cohen, 1972 on TY plates containing 80 .mu.g./ml. of antibiotic ampicillin. The transformants were conventionally cultured and the desired transformants identified by screening for nuclease activity and by size, restriction site and DNA sequence analysis of the constitutive plasmids. The thus identified transformants, designated as E. coli K12 JA221/pOW323/Z, were conventionally grown for subsequent production and isolation of plasmid pOW323/Z.
EXAMPLE 23
Construction of Plasmid pOW323 and E. coli K12 JA221/pOW323
A. EcoRI-PvuII Digestion of Plasmid pBR322
The desired digestion was carried out in substantial accordance with the teaching of Example 1A-2 except that PvuII, rather than SfaNI, restriction enzyme was used in the second digestion. The desired digest was conventionally extracted, ethanol precipitated and dissolved in about 10 .mu.l. of TE.
B. EcoRI-PvuII Digestion of Plasmid pOW323/Z and Isolation of the .about.0.9 kb Fragments
The desired digestion and isolation were carried out in substantial accordance with the teaching of Example 1A-2 except that PvuII, rather than SfaNI, restriction enzyme was used in the second digestion. The desired .about.0.9 kb EcoRI-PvuII fragments were dissolved in about 10 .mu.l. of TE.
C. Ligation and Transformation
The desired ligation was carried out in substantial accordance with the teaching of Example 6E. The resultant ligated DNA was used to transform E. coliK12 JA221 in substantial accordance with the procedure of Lederburg and Cohen, 1972 on TY plates containing 80 .mu.g./ml. of antibiotic ampicillin. The transformants were conventionally identified by screening for nuclease activity and by size, restriction and DNA sequence analysis of the constitutive plasmids. The thus identified transformants, designated as E. coli K12 JA221/pOW323, were conventionally grown for subsequent production and isolation of plasmid pOW323.
EXAMPLE 24
Construction of Plasmid pOW324 and E. coli K12 JA221/pOW324
A. NcoI Digestion of Plasmid pOW323
The desired digestion was carried out in substantial accordance with the teaching of Example 6A except that plasmid pOW323, rather than plasmid pOW10, was used.
B. Construction of the DNA Fragment ##STR8## wherein A is deoxyodenyl,
G is deoxyguanyl,
C is deoxycytosyl and
T is thymidyl.
The desired fragment was constructed using an automated phosphite triester method. Although any DNA synthesizer can be used, the DNA Synthesizer 380A of Applied Biosystems, Foster City, Calif. is preferred. Those skilled in the art will recognize that the above sequence can also be conventionally synthesized in accordance with the procedure of Itakura et al., 1977, Science 198:1056 and Crea et al., 1978, Proc. Nat. Acad. Sci. U.S.A. 75:5765. In addition, an especially preferred synthetic method is disclosed in Hsuing et al., 1983, Nucleic Acid Research 11:3227 and Narang et al, 1980, Methods in Enzymology 68:90. The desired fragment was dissolved in TE and stored at 0.degree. C. for future use.
C. Ligation and Transformation
The desired ligation of the fragments of Example 24A and B was carried out in substantial accordance with the teaching of Example 6E. The resultant ligated DNA was used to transform E. coliK12 JA221 in substantial accordance with the procedure of Lederburg and Cohen, 1972 on TY plates containing 80 .mu.g./ml. of antibiotic ampicillin. The transformants were conventionally cultured and the desired transformants identified by screening for nuclease activity and by size, restriction and DNA sequence analysis of the constitutive plasmids. The thus identified transformants, designated as E. coli K12 JA221/pOW324, were conventionally grown for subsequent production and isolation of plasmid pOW324.
EXAMPLE 25
Construction of Plasmid pOW441 and E. coli K12 JA221/POW441
A. EcoRI Digestion of Plasmid pOW324
The desired digestion was carried out in substantial accordance with the teaching of Example 2D except that about 1 .mu.g of plasmid pOW324, rather than plasmids pOW10 and pHI-18, was used. The desired digest was dissolved in about 10 .mu.l. of TE and stored at 0.degree. C. for future use.
B. EcoRI Digestion of Plasmid pOW430
The bacterium Bacillus subtilis MI112/pOW430 (NRRL B-15833) was cultured and plasmid pOW430 isolated in substantial accordance with the teaching of Example 2. The desired plasmid pOW430 was dissolved in TE buffer and then digested with EcoRI restriction enzyme in substantial accordance with the teaching of Example 2D. The resultant digest was dissolved in about 10 .mu.l. of TE and stored at 0.degree. C. for future use.
C. Ligation and Transformation
The desired ligation was carried out in substantial accordance with the teaching of Example 6E. The resultant ligated DNA was used to transform E. coli K12 JA221 in substantial accordance with the procedure of Lederburg and Cohen, 1972 on TY plates containing 20 .mu.g./ml. of antibiotic chloramphenicol. Transformants were screened and desired transformants identified in accordance with the procedure of Example 24C. The thus identified transformants, designated as E. coli K12 JA221/pOW441, were conventionally grown for subsequent production and isolation of plasmid pOW441. A restriction site map of plasmid pOW441 is presented in FIG. 6 of the accompanying drawings.
Those skilled in the art will recognize that the above procedure also generates plasmids in which the orientation of the plasmid pOW324 DNA is opposite the orientation found in plasmid pOW441. Such plasmids, including the E coli and Bacillus transformants thereof, are also within the scope of the present invention and can be readily identified using conventional restriction site analysis and other tests.
EXAMPLE 26
Construction of Bacillus subtilis MI112/pOW441
The desired construction was made in substantial accordance with the teaching of Example 2C except that plasmid pOW441, rather than plasmid pHI-18, was used. The thus constructed transformants express Staphylococcus nuclease intracellularly and also secrete nuclease into the culture medium. For screening transformants, individual colonies were picked and scratched on TB-D plates (Shortle, 1983, Gene 22:181) followed by incubation at 37.degree. C. for 1-16 hours. Broth cultures were generally assayed at late logrithmic growth phase (330-370 Klett units 54 filter). Thirty .mu.l. samples were spotted into wells (5 mm diameter) cut into immunodiffusion plates (Miles Laboratories, Elkhart, Ind.) of TB-D agar (10 ml., 1.8 mm depth). Incubation at 37.degree. C. for 1-2 hours was sufficient for determining, as indicated by the formation of halos, positive nuclease producers. Cell extracts and medium were also assayed for nuclease activity in substantial accordance with the procedure of Cuatrecasas et al., 1967, J. Biol. Chem. 25:6544, except that all assays were performed at ambient temperature.
EXAMPLE 27
Construction of Plasmid pOW445 and E. coli K12 JA221/pOW445
A. EcoRI Digestion of Plasmid pOW323
The desired digestion was carried out in substantial accordance with the teaching of Example 2D except that about 2 .mu.l. (1 .mu.g.) of plasmid pOW323, rather than plasmids pOW10 and pHI-18, were used. The desired digest was dissolved in about 10 .mu.l. of TE and stored at 0.degree. C. for future use.
B. Ligation and Transformation
The EcoRI-digested plasmids pOW430 (prepared in Example 25B) and pOW323 were ligated in substantial accordance with the teaching of Example 6E. The resultant ligated DNA was used to transform E. coli K12 JA221 in substantial accordance with the procedure of Lederburg and Cohen, 1972 on TY plates containing 20 .mu.g./ml. of antibiotic chloramphenicol. Transformants were screened and desired transformants identified in accordance with the procedure of Example 24C. The thus identified transformants, designated as E. coli K12 JA221/pOW445, were grown for subsequent production and isolation of plasmid pOW445. A restriction site map of plasmid pOW445 is presented in FIG. 7 of the accompanying drawings.
Those skilled in the art will recognize that the above procedure also generates plasmids in which the orientation of the plasmid pOW323 DNA is opposite the orientation found in plasmid pOW445. Such plasmids, including the E. coli and Bacillus transformants thereof, are also within the scope of the present invention and can be readily identified using conventional restriction site analysis and other tests.
EXAMPLE 28
Construction of Bacillus subtilis MI112/pOW445
The desired construction was made in substantial accordance with the teaching of Example 2C except that plasmid pOW445, rather than plasmid pHI-18, was used. The thus constructed transformants express Staphylococcus nuclease intracellularly. Nuclease expression was determined by the method previously described in Example 26.
EXAMPLE 29
Efficiency of Expression and Secretion of Nuclease
Production of nuclease was improved by using a minimal salts medium fortified with amino acids and with glycerol and citrate as carbon sources. Such improved production may be due to the fact that bacilli secrete higher levels of protein under conditions that limit growth and that protease production is reduced when amino acids are added to the medium. The level of nuclease appeared to be dependent on the concentration of sodium ions in the medium. Although levels of one percent improved expression and secretion of nuclease, increasing the sodium ion content to two percent either as sodium citrate or sodium chloride decreased the level of nuclease activity in the culture supernatant.
Claims
We claim:
1. A novel recombinant DNA expression vector which comprises (1) the ribosome binding site-containing DNA sequence ##STR9## wherein A is deoxyadenyl, G is deoxyguanyl, C is deoxycytosyl, T is thymidyl, R is G or C, and R.sup.1 is G or C, (2) the veg promoter of Bacillus subtilis, and (3) a gene that encoes a functional polypeptide, subject to the limitation that R and R.sup.1 are not simultaneously the same deoxyribonucleotide and subject to the further limitation that said vector is selectable and that said promoter and said DNA sequence direct transcription and expression of said gene in a host cell transformed by said vector.
2. The expression vector of claim 1 which is a plasmid.
3. The expression vector of claim 2 wherein the gene that encodes a functional polypeptide is selected from the group consisting of genes that encode human pre-proinsulin, human proinsulin, human insulin A-chain, human insulin B-chain, non-human insulin, human growth hormone, non-human growth hormone, bovine growth hormone, porcine growth hormone, human interferon, non-human inteferon, viral antigen, urokinase, hormones and enzymes.
4. The expression vector of claim 3 in which the gene encodes human pre-proinsulin.
5. The expression vector of claim 3 in which the gene encodes human proinsulin.
6. The expression vector of claim 3 in which the gene encodes human insulin A-chain.
7. The expression vector of claim 3 in which the gene encodes human insulin B-chain.
8. The expression vector of claim 3 in which the gene encodes non-human insulin.
9. The expression vector of claim 3 in which the gene encodes human growth hormone.
10. The expression vector of claim 3 in which the gene encodes non-human growth hormone.
11. The expression vector of claim 3 in which the gene encodes bovine growth hormone.
12. The expression vector of claim 3 in which the gene encodes porcine growth hormone.
13. The expression vector of claim 3 in which the gene encodes human interferon.
14. The expression vector of claim 3 in which the gene encodes viral antigen.
15. The expression vector of claim 3 in which the gene encodes a hormone.
16. The expression vector of claim 3 in which the gene encodes an enzyme.
17. The expression vector of claim 1 which is selected from the group consisting of plasmids pOW10, pOW303, pOW523, pOW524, POW525, pOW526, pO-W527, pOW528, pOW529, pOW530, pOW11, pOW531, pOW532, pOW533, pOW534, pOW310, pOW535, pOW536, pOW537 and pOW538.
18. The expression vector of claim 17 which is pOW10.
19. The expression vector of claim 17 which is pOW303.
20. The expression vector of claim 17 which is pOW523.
21. The expression vector of claim 17 which is pOW524.
22. The expression vector of claim 17 which is pOW525.
23. The expression vector of claim 17 which is pOW526.
24. The expression vector of claim 17 which is pOW527.
25. The expression vector of claim 17 which is pOW528.
26. The expression vector of claim 17 which is pOW529.
27. The expression vector of claim 17 which is pOW530.
28. The DNA sequence of claim 1 which is ##STR10## wherein A is deoxyadenyl, G is deoxyguanyl, C is deoxycytosyl, T is thymidyl, R is G or C and R.sup.1 is G or C, subject to the limitation that R and R.sup.1 are not simultaneously the same deoxyribonucleotide.
29. A transformed host cell comprising a recombinant DNA expression vector of claim 1.
30. The transformed host cell of claim 29 which is Bacillus.
31. The transformed host cell of claim 30 which is Bacillus subtilis.
32. The transformed host cell of claim 29 which is E. coli.
33. The transformed host cell of claim 31 wherein the gene that encodes a functional polypeptide is selected from the group consisting of genes that encode human pre-proinsulin, human proinsulin, human insulin A-chain, human insulin B-chain, non-human insulin, human growth hormone, non-human growth hormone, bovine growth hormone, porcine growth hormone, human interferon, non-human interferon, viral antigen, urokinase, hormones and enzymes.
34. The transformed host cell of claim 33 in which the gene encodes human pre-proinsulin.
35. The transformed host cell of claim 33 in which the gene encodes human proinsulin.
36. The transformed host cell of claim 33 in which the gene encodes human insulin A-chain.
37. The transformed host cell of claim 33 in which the gene encodes human insulin B-chain.
38. The transformed host cell of claim 33 in which the gene encodes human growth hormone.
39. The transformed host cell of claim 33 in which the gene encodes bovine growth hormone.
40. The transformed host cell of claim 33 in which the gene encodes porcine growth hormone.
41. A transformed host cell comprising a recombinant DNA expression vector of claim 17.
42. The transformed host cell of claim 30 wherein the recombinant DNA expression vector is selected from the group consisting of plasmids pOW523, pOW524, POW525, pOW526, pOW527, pOW528, pOW529, pOW530, pOW531, pOW532, pOW533, pOW534, pOW535, pOW536, pOW537 and pOW538.
43. The transformed host cell of claim 41 which is E. coli.
44. The transformed host cell of claim 42 which is Bacillus subtilis.
45. The transformed host cell of claim 44 which is Bacillus subtilis MI112/pOW523.
46. The transformed host cell of claim 44 which is Bacillus subtilis MI112/pOW524.
47. The transformed host cell of claim 44 which is Bacillus subtilis MI112/pOW525.
48. The transformed host cell of claim 44 which is Bacillus subtilis MI112/pOW526.
49. The transformed host cell of claim 44 which is Bacillus subtilis MI112/pOW527.
50. The transformed host cell of claim 44 which is Bacillus subtilis MI112/pOW528.
51. The transformed host cell of claim 44 which is Bacillus subtilis MI112/pOW529.
52. The transformed host cell of claim 44 which is Bacillus subtilis MI112/pOW530.
53. A method for producing a functional polypeptide in Bacillus wherein said polypeptide is secreted into the culture medium, said method comprises transforming a Bacillus host cell with a recombinant DNA expression vector which comprises (1) the ribosome binding site-containing DNA sequence ##STR11## wherein A is deoxyadenyl, G is deoxyguanyl, C is deoxycytosyl, T is thymidyl, R is G or C, and R.sup.1 is G or C (2) the veg promoter of Bacillus subtilis, and (3) a gene that encodes a signal peptide-containing functional polypeptide, and culturing said transformed Bacillus host cell under growth conditions, subject to the limitation that R and R.sup.1 are not simultaneously the same deoxyribonucleotide and subject to the further limitation that said vector is selectable and that said promoter and said DNA sequence direct transcription and expression of said gene in said transformed Bacillus cell.
54. The method of claim 53 wherein the expression vector is a plasmid and the host cell is Bacillus subtilis.
55. The method of claim 54 wherein the gene that encodes a signal peptide-containing polypeptide is selected from the group of genes consisting of genes that encode human pre-proinsulin, pre-growth hormone, pre-bovine growth hormone, pre-human growth hormone, pre-porcine growth hormone, immune modulators, proteolytic degradative enzymes, and cellulolytic degradative enzymes.
56. The method of claim 55 in which the gene encodes human pre-proinsulin.
57. The method of claim 55 in which the gene encodes pre-growth hormone.
58. The method of claim 55 in which the gene encodes pre-bovine growth hormone.
59. The method of claim 55 in which the gene encodes pre-porcine growth hormone.
60. The method of claim 55 in which the gene encodes pre-human growth hormone.
61. The method of claim 53 wherein the expression vector is selected from the group of plasmids consisting of plasmids pOW525, pOW526, pOW527, pOW528, POW531, pOW532, pOW533 and pOW534.
62. The method of claim 61 wherein the host cell is Bacillus subtilis.
63. The method of claim 62 in which the host cell is Bacillus subtilis MI112/pOW525.
64. The method of claim 62 in which the host cell is Bacillus subtilis MI112/pOW526.
65. The method of claim 62 in which the host cell is Bacillus subtilis MI112/pOW527.
66. The method of claim 62 in which the host cell is Bacillus subtilis MI112/pOW528.
67. The expression vector of claim 17 which is plasmid pOW11.
68. The expression vector of claim 17 which is plasmid pOW310.
69. The expression vector of claim 17 which is plasmid pOW531.
70. The expression vector of claim 17 which is plasmid pOW533.
71. The expression vector of claim 17 which is plasmid pOW535.
72. The expression vector of claim 17 which is plasmid pOW537.
73. The transformed host cell of claim 42 which is Bacillus subtilis MI112/pOW531.
74. The transformed host cell of claim 42 which is Bacillus subtilis MI112/pOW533.
75. The transformed host cell of claim 42 which is Bacillus subtilis MI112/pOW535.
76. The transformed host cell of claim 43 which is Bacillus subtilis MI112/pOW537.
77. The method of claim 61 wherein the host cell is Bacillus subtilis MII12/pOW531.
78. The method of claim 61 wherein the host cell is Bacillus subtilis MI112/pOW533.
79. An expression vector selected from the group consisting of plasmids pOW323/Z, pOW323, pOW324, pOW441 and pOW445.
80. The vector of claim 79 which is pOW323.
81. The vector of claim 77 which is pOW441.
82. The vector of claim 79 which is pOW445.
83. A transformed host cell comprising an expression vector of claim 79.
84. The transformed host cell of claim 83 which is selected from the group consisting of E. coli and Bacillus subtilis and wherein the plasmid is selected from the group consisting of pOW441 and pOW445.
85. The transformed host cell of claim 84 which is Bacillus subtilis MI112/pOW441.
86. The transformed host cell of claim 84 which is Bacillus subtilis MI112/pOW445.
87. The method of claim 53 wherein the expression vector is pOW441.
Patent Citations (3)
| Patent | Date | Inventor | Cited By |
|---|---|---|---|
| US4559300 | 1985-12-01 | Kovacevic et al. | |
| EPX36259 | 1981-09-01 | ||
| EPX63953 | 1982-11-01 |
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