US 12,709,596 B2Grant
Molecules
Issue Date:2026-08-18
•20 Claims
•5 Drawing Sheets
Abstract
The present invention relates to TLR2 agonist compounds and their compositions, and the use of such compounds and compositions in the prevention and/or treatment of respiratory infections, or diseases or conditions associated with viral or bacterial infections.
Metadata
Assignee
- ENA Respiratory Pty Ltd
Inventors
- Ian Holmes
- Weiguang Zeng
- David Jackson
- Christophe Demaison
- Grant Mclachlan
Application Information
Application Number:US 17/622,451
Filing Date:2020-06-26
Priority Date:2019-06-26
Art Unit:1692
Classifications
IPC:
C07C321/14A61K47/60A61K47/64A61P31/12C07K5/083C08G65/334
Patent Drawings (5 sheets)
Description
[0001] This application is a 35 U.S.C. § 371 national stage filing of International Application No. PCT/AU2020/050660, filed on Jun. 26, 2020, which claims priority to Australian provisional patent application no. 2019902231, filed on Jun. 26, 2019 and Australian provisional patent application no. 2019904862, filed on Dec. 20, 2019, the entire contents of each of which are hereby incorporated by reference.
FIELD OF THE INVENTION
[0002] The present invention relates to compounds and their compositions, and the use of such compounds and compositions in the prevention and/or treatment of respiratory infections, or respiratory diseases or conditions associated with viral or bacterial infections.
BACKGROUND OF THE INVENTION
[0003] Respiratory infections are among the most common causes of human disease worldwide and are commonly caused by viruses. According to the World Health Organisation (WHO), worldwide, seasonal epidemics of influenza alone are estimated to result in about 3 to 5 million cases of severe illness, and about 250,000 to 500,000 deaths per year.
[0004] Although vaccines are available for some seasonal strains, for example influenza, these have not always been shown to be adequate due to several factors, such as infection between the lag phase between inoculation and the formation of antibodies and immune cells being formed. Seasonal vaccinations often also need modification, including re-formulation and administration, and may also not provide protection for the full length of time desired. For other occurrences of influenza, such as unexpected panademic outbreaks, a vaccine is not always known, developed or available.
[0005] Viral respiratory infections can also worsen the severity of diseases of the respiratory conditions leading to exacerbations (attacks). Exacerbations can occur for conditions such as asthma and chronic obstructive pulmonary disease (COPD). Asthma and COPD exacerbations are the most clinically and economically important forms of the diseases.
[0006] The vast majority of exacerbations, particularly in asthma, continue to occur despite use of the best available current therapies. When exacerbations do occur, treatment options are limited and have developed little in recent years. Treatment involves increasing doses of inhaled bronchodilators and systemic or oral corticosteroids—which are the same drugs that failed to prevent the exacerbation occurring in the first place.
[0007] There is a need, therefore, for new or improved compounds and methods for the treatment and/or prevention for respiratory infections, or respiratory conditions associated with viral or bacterial infections.
[0008] Reference to any prior art in the specification is not an acknowledgment or suggestion that this prior art forms part of the common general knowledge in any jurisdiction or that this prior art could reasonably be expected to be understood, regarded as relevant, and/or combined with other pieces of prior art by a skilled person in the art.
SUMMARY OF THE INVENTION
[0009] The present invention provides Toll-Like Receptor 2 protein (TLR2) agonist compounds and their compositions. TLR2 agonists have previously been identified to show potential in treating respiratory diseases and conditions associated with infectious agents such as viruses and bacteria. Advantageously, the compounds and compositions of the present application may show activity and have use in therapeutic areas such as treating and/or preventing respiratory diseases or conditions associated with viral or bacterial infections. In addition, the compounds and compositions of the present application may demonstrate increased stability which may translate to longer clearance rates following administration. Compounds of the invention demonstrate improved solution stability compared to other related compounds.
[0010] In one aspect, the present invention provides a compound comprising the structure:
A-Y—B
A-Y—B
-
- [0011] wherein A comprises or consists of:
[0012]
-
- [0013] wherein
- [0014] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, such as from 2 to 5, provided that:
- [0015] the sum of b, v, and w is at least 3; and
- [0016] the sum of b and w is from 0 to 7;
- [0017] z is 1 or 2;
- [0018] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0019] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, S(═O), —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0020] R11, R12, Rx, Ry, R14, R15, R16, and R17 are each independently H or C1-C6 aliphatic;
- [0021] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0022] R19 is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0023] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0024] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0025] A2 is an amino acid or a peptide;
- [0026] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0027] Y is
[0028]
-
- [0029] wherein R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0030] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0031] and
- [0032] B comprises or consists of Polyethylene Glycol (PEG),
- [0033] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0034] The present invention also provides a compound comprising A and PEG, wherein the A and PEG are linked by a glycine, serine, homoserine, threonine, phosphoserine, asparagine or glutamine residue, or an ester of a glutamine residue,
-
- [0035] wherein
- [0036] A in the compound has the structure:
[0037]
-
- [0038] wherein
- [0039] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, such as from 2 to 5, provided that:
- [0040] the sum of b, v, and w is at least 3; and
- [0041] the sum of b and w is from 0 to 7;
- [0042] z is 1 or 2;
- [0043] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0044] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, —S(═O)—, —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0045] R11, R12, Rx, Ry, R14, R15, R16, and R17 at each instance of b, v, w, and z are each independently H or C1-C6 aliphatic;
- [0046] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0047] R19 is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0048] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0049] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0050] A2 is an amino acid or a peptide;
- [0051] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0052] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0053] In one aspect, the present invention provides a compound comprising:
[0054]
-
- [0055] wherein R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0056] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0057] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, provided that:
- [0058] the sum of b, v, and w is at least 3; and
- [0059] the sum of b and w is from 0 to 7;
- [0060] z is 1 or 2;
- [0061] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0062] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, —S(═O)—, —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0063] R11, R12, Rx, Ry, R14, R15, R16, and R17 at each instance of b, v, w, and z are each independently H or C1-C6 aliphatic;
- [0064] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0065] R19 is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0066] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0067] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0068] A2 is an amino acid or a peptide;
- [0069] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0070] covalently linked to polyethylene glycol (PEG),
or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0071] In one aspect, the present invention provides a compound of formula (VI):
[0072]
-
- [0073] wherein
- [0074] n is 3 to 100;
- [0075] m is 1, 2, 3 or 4;
- [0076] p is 2, 3 or 4;
- [0077] q is null or 1;
- [0078] R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0079] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0080] wherein when q=1, R3 is —NH2 or —OH;
- [0081] wherein when q=0, R3 is H;
- [0082] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid or derived from a natural alpha amino acid, and has the formula:
[0083]
-
- [0084] wherein R4 is H; and
- [0085] R5 is the side chain, or second hydrogen of the amino acid;
- [0086] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, provided that:
- [0087] the sum of b, v, and w is at least 3; and
- [0088] the sum of b and w is from 0 to 7;
- [0089] z is 1 or 2;
- [0090] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0091] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, —S(═O)—, —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0092] R11, R12, Rx, Ry, R14, R15, R16, and R17 at each instance of b, v, w, and z are each independently H or C1-C6 aliphatic;
- [0093] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0094] R19 is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0095] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0096] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0097] A2 is an amino acid or a peptide;
- [0098] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0099] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0100] In one embodiment, the present invention provides a compound of formula (VII):
A-Y—NH—(CH2)p—O—(CH2—CH2—O)n—[(CH2)m—CO-L-]qR3 (VII)
A-Y—NH—(CH2)p—O—(CH2—CH2—O)n—[(CH2)m—CO-L-]qR3 (VII)
-
- [0101] wherein
- [0102] A has the structure:
[0103]
-
- [0104] Y is
[0105]
-
- [0106] wherein R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0107] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0108] n is 3 to 100;
- [0109] m is 1, 2, 3 or 4;
- [0110] p is 2, 3 or 4;
- [0111] q is null or 1;
- [0112] wherein when q=1, R3 is —NH2 or —OH;
- [0113] wherein when q=0, R3 is H;
- [0114] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid or derived from a natural alpha amino acid, and has the formula:
[0115]
-
- [0116] wherein R4 is H; and
- [0117] R5 is the side chain, or second hydrogen of the amino acid;
- [0118] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, provided that:
- [0119] the sum of b, v, and w is at least 3; and
- [0120] the sum of b and w is from 0 to 7;
- [0121] z is 1 or 2;
- [0122] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0123] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, —S(═O)—, —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0124] R11, R12, Rx, Ry, R14, R15, R16, and R17 at each instance of b, v, w, and z are each independently H or C1-C6 aliphatic;
- [0125] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0126] R19 is H, C1-C5 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0127] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0128] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0129] A2 is an amino acid or a peptide;
- [0130] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0131] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0132] In one embodiment, the compound has the formula (X):
[0133]
-
- [0134] wherein
- [0135] n is 3 to 100;
- [0136] k is 3 to 100;
- [0137] m is 1, 2, 3 or 4;
- [0138] p is 2, 3 or 4;
- [0139] t is 2, 3 or 4;
- [0140] h is 1, 2, 3 or 4;
- [0141] q is null or 1;
- [0142] wherein R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0143] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0144] wherein when q=1, R3 is —NH2 or —OH;
- [0145] wherein when q=0, R3 is H;
- [0146] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid or derived from a natural alpha amino acid, and has the formula:
[0147]
-
- [0148] wherein R4 is H; and
- [0149] R5 is the side chain, or second hydrogen of the amino acid;
- [0150] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, provided that:
- [0151] the sum of b, v, and w is at least 3; and
- [0152] the sum of b and w is from 0 to 7;
- [0153] z is 1 or 2;
- [0154] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0155] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, —S(═O)—, —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0156] R11, R12, Rx, Ry, R14, R15, R16, and R17 at each instance of b, v, w, and z are each independently H or C1-C6 aliphatic;
- [0157] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0158] R19 is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0159] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0160] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0161] A2 is an amino acid or a peptide;
- [0162] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0163] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0164] The present invention also provides for compositions comprising, consisting essentially of, or consisting of, a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof, and a pharmaceutically acceptable carrier, diluent or excipient.
[0165] In one aspect, the present invention provides a method of treating and/or preventing a disease, comprising raising an innate immune response in a subject by administering an effective amount of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof to the subject in need thereof.
[0166] In another aspect, the present invention provides a method of treating and/or preventing a disease associated with, or caused by, an infectious agent, comprising administering to a subject in need thereof an effective amount of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0167] In another aspect, the present invention provides a method of treating and/or preventing a respiratory disease or condition associated with a viral or bacterial infection, comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0168] In another aspect, the present invention provides a method of treating and/or preventing a respiratory infection, comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0169] In another aspect, the present invention provides a method for reducing airway inflammation, comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0170] The present invention also provides a method of improving the ability of a subject to control a respiratory disease or condition during a respiratory viral infection, the method comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0171] The present invention also provides a method of treating and/or preventing a disease or condition associated with the TLR2 receptor, the method comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0172] The present invention also provides a method of agonising TLR2 activity in a cell, the method comprising contacting the cell with a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0173] In another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for raising an innate immune response in a subject.
[0174] In another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a disease caused by an infectious agent.
[0175] In another aspect, the present invention further provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a respiratory disease or condition associated with a viral or bacterial infection in a subject.
[0176] In another aspect, the present invention further provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a respiratory infection in a subject.
[0177] In another aspect, the present invention further provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for reducing airway inflammation.
[0178] In another aspect, the present invention further provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for improving the ability of a subject to control a respiratory disease or condition during a respiratory viral infection.
[0179] In another aspect, the present invention further provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a disease or condition associated with the TLR2 receptor.
[0180] In one aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof, for raising an innate immune response in a subject.
[0181] In another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof, for preventing a disease caused by an infectious agent, in a subject.
[0182] In another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof, for treating and/or preventing a respiratory disease or condition associated with a viral or bacterial infection in a subject.
[0183] In another aspect, the invention provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof for reducing airway inflammation in a subject.
[0184] In another aspect, the invention provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof for controlling a respiratory disease or condition during a respiratory viral infection in a subject.
[0185] In another aspect, the invention provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof for treating and/or preventing a disease or condition associated with the TLR2 receptor.
[0186] In another aspect, the present invention further provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof for agonising TLR2 in a cell.
[0187] The present invention also provides a kit for use, or when used, in a method of the invention, the kit comprising, consisting essentially of or consisting of:
-
- [0188] a compound of the invention as described herein; and optionally
- [0189] written instructions describing the use of the compound in a method of the invention.
[0190] In yet another aspect, the present invention provides a process for preparing a compound of the invention. In some embodiments, the method comprises the steps outlined in the syntheses shown in the Examples.
[0191] Further aspects of the present invention and further embodiments of the aspects described in the preceding paragraphs will become apparent from the following description, given by way of example and with reference to the accompanying drawings.
BRIEF DESCRIPTION OF THE DRAWINGS
[0192] FIG. 1 . TLR2 activity of compounds 3, 4, 15 and 16 from the NK-κB luciferase assay described in Example 2.
[0193] FIG. 2 . Two-week (14 day) stability results of compounds 3, 4, 15 and 16 after being stored in either saline (0.9%) or phosphate buffered saline (PBS; pH 7.4) at either 25° C. or 40° C. relative to the percent peak area of the main HPLC peak at time zero, which was normalised to 100% to exclude the contribution of impurities to the total peak area.
[0194] FIG. 3 . Two-week (14 day) stability results as for FIG. 2 generated using the areas of the main peaks expressed as a percentage of the areas at time zero.
[0195] FIG. 4 . TLR2 activity of compounds 4, 20, 24 and 36 from the NK-κB luciferase assay described in Example 9.
DETAILED DESCRIPTION OF THE EMBODIMENTS
[0196] It will be understood that the invention disclosed and defined in this specification extends to all alternative combinations of two or more of the individual features mentioned or evident from the text or drawings. All of these different combinations constitute various alternative aspects of the invention.
[0197] Reference will now be made in detail to certain embodiments of the invention. While the invention will be described in conjunction with the embodiments, it will be understood that the intention is not to limit the invention to those embodiments. On the contrary, the invention is intended to cover all alternatives, modifications, and equivalents, which may be included within the scope of the present invention as defined by the claims.
[0198] One skilled in the art will recognize many methods and materials similar or equivalent to those described herein, which could be used in the practice of the present invention. The present invention is in no way limited to the methods and materials described. It will be understood that the invention disclosed and defined in this specification extends to all alternative combinations of two or more of the individual features mentioned or evident from the text or drawings. All of these different combinations constitute various alternative aspects of the invention.
[0199] All of the patents and publications referred to herein are incorporated by reference in their entirety.
[0200] As used herein, except where the context requires otherwise, the term “comprise” and variations of the term, such as “comprising”, “comprises” and “comprised”, are not intended to exclude further additives, components, integers or steps.
[0201] For purposes of interpreting this specification, terms used in the singular will also include the plural and vice versa.
[0202] The general chemical terms used in the formulae herein have their usual meaning.
[0203] The term “aliphatic” is intended to include saturated and unsaturated, nonaromatic, straight chain, branched, acyclic, and cyclic hydrocarbons. Those skilled in the art will appreciate that aliphatic groups include, for example, alkyl, alkenyl, alkynyl, cycloalkyl, and cycloalkenyl groups, and hybrids thereof such as (cycloalkyl)alkyl, (cycloalkenyl)alkyl and (cycloalkyl)alkenyl groups. In various embodiments, aliphatic groups comprise from 1-12, 1-8, 1-6, or 1-4 carbon atoms. In some embodiments, aliphatic groups comprise 5-21, from 9-21, or from 11-21 carbon atoms, such as from 11, 13, 15, 17, or 19 carbon atoms. In some embodiments, the aliphatic group is saturated.
[0204] The term “heteroaliphatic” is intended to include aliphatic groups, wherein one or more chain and/or ring carbon atoms are independently replaced with a heteroatom, preferably a heteroatom selected from oxygen, nitrogen and sulfur. In some embodiments, the heteroaliphatic is saturated. Examples of heteroaliphatic groups include linear or branched, heteroalkyl, heteroalkenyl, and heteroalkynyl groups.
[0205] The term “alkyl” is intended to include saturated straight chain and branched chain hydrocarbon groups. In some embodiments, alkyl groups have from 1 to 12, 1 to 10, 1 to 8, 1 to 6, or from 1 to 4 carbon atoms. In some embodiments, alkyl groups have from 5-21, from 9-21, or from 11-21 carbon atoms, such as from 11, 13, 15, 17, or 19 carbon atoms. Examples of straight chain alkyl groups include, but are not limited to, methyl, ethyl, n-propyl, n-butyl, n-pentyl, n-hexyl, n-heptyl, and n-octyl. Examples of branched alkyl groups include, but are not limited to, isopropyl, iso-butyl, sec-butyl, tert-butyl, neopentyl, isopentyl, and 2,2-dimethylpropyl.
[0206] The term “alkenyl” is intended to include straight and branched chain alkyl groups having at least one double bond between two carbon atoms. In some embodiments, alkenyl groups have from 2 to 12, from 2 to 10, from 2 to 8, from 2 to 6, or from 2 to 4 carbon atoms. In some embodiments, alkenyl groups have from 5-21, from 9-21, or from 11-21 carbon atoms, such as from 11, 13, 15, 17, or 19 carbon atoms.
[0207] In some embodiments, alkenyl groups have one, two, or three carbon-carbon double bonds. Examples of alkenyl groups include, but are not limited to, vinyl, allyl, —CH═CH(CH3), —CH═C(CH3)2, —C(CH3)═CH2, and —C(CH3)═CH(CH3).
[0208] The term “alkynyl” is intended to include straight and branched chain alkyl groups having at least one triple bond between two carbon atoms. In some embodiments, the alkynyl group have from 2 to 12, from 2 to 10, from 2 to 8, from 2 to 6, or from 2 to 4 carbon atoms. In some embodiments, alkynyl groups have one, two, or three carbon-carbon triple bonds. Examples include, but are not limited to, —C═CH, —C═CH3, —CH2C═CH3, and —C═CH2CH(CH2CH3)2.
[0209] The term “heteroalkyl” is intended to include alkyl groups, wherein one or more chain carbon atoms are replaced with a heteroatom, preferably a heteroatom selected from the group consisting of oxygen, nitrogen, and sulfur. In some embodiments, the heteroalkyl is saturated. Heteroalkyl groups include, for example, polyethylene glycol groups and polyethylene glycol ether groups, and the like.
[0210] The term “cycloalkyl” is intended to include mono-, bi- or tricyclic alkyl groups. In some embodiments, cycloalkyl groups have from 3 to 12, from 3 to 10, from 3 to 8, from 3 to 6, from 3 to 5 carbon atoms in the ring(s). In some embodiments, cycloalkyl groups have 5 or 6 ring carbon atoms. Examples of monocyclic cycloalkyl groups include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl. In some embodiments, the cycloalkyl group has from 3 to 8, from 3 to 7, from 3 to 6, from 4 to 6, from 3 to 5, or from 4 to 5 ring carbon atoms. Bi- and tricyclic ring systems include bridged, spiro, and fused cycloalkyl ring systems. Examples of bi- and tricyclic ring cycloalkyl systems include, but are not limited to, bicyclo[2.1.1]hexanyl, bicyclo[2.2.1]heptanyl, adamantyl, and decalinyl.
[0211] The term “cycloalkenyl” is intended to include non-aromatic cycloalkyl groups having at least one double bond between two carbon atoms. In some embodiments, cycloalkenyl groups have one, two or three double bonds. In some embodiments, cycloalkenyl groups have from 4 to 14, from 5 to 14, from 5 to 10, from 5 to 8, or from 5 to 6 carbon atoms in the ring(s). In some embodiments, cycloalkenyl groups have 5, 6, 7, or 8 ring carbon atoms. Examples of cycloalkenyl groups include cyclohexenyl, cyclopentenyl, cyclohexadienyl, butadienyl, pentadienyl, and hexadienyl.
[0212] The term “aryl” is intended to include cyclic aromatic hydrocarbon groups that do not contain any ring heteroatoms. Aryl groups include monocyclic, bicyclic and tricyclic ring systems. Examples of aryl groups include, but are not limited to, phenyl, azulenyl, heptalenyl, biphenyl, fluorenyl, phenanthrenyl, anthracenyl, indenyl, indanyl, pentalenyl, and naphthyl. In some embodiments, aryl groups have from 6 to 14, from 6 to 12, or from 6 to 10 carbon atoms in the ring(s). In some embodiments, the aryl groups are phenyl or naphthyl. Aryl groups include aromatic-aliphatic fused ring systems. Examples include, but are not limited to, indanyl and tetrahydronaphthyl.
[0213] The term “heterocyclyl” is intended to include non-aromatic ring systems containing 3 or more ring atoms, of which one or more is a heteroatom. In some embodiments, the heteroatom is nitrogen, oxygen, or sulfur. In some embodiments, the heterocyclyl group contains one, two, three, or four heteroatoms. In some embodiments, heterocyclyl groups include mono-, bi- and tricyclic rings having from 3 to 16, from 3 to 14, from 3 to 12, from 3 to 10, from 3 to 8, or from 3 to 6 ring atoms. Heterocyclyl groups include partially unsaturated and saturated ring systems, for example, imidazolinyl and imidazolidinyl. Heterocyclyl groups include fused and bridged ring systems containing a heteroatom, for example, quinuclidyl. Heterocyclyl groups include, but are not limited to, aziridinyl, azetidinyl, azepanyl, diazepanyl, 1,3-dioxanyl, 1,3-dioxolanyl, isoxazolidinyl, morpholinyl, piperazinyl, piperidinyl, pyranyl, pyrazolidinyl, pyrrolinyl, pyrrolidinyl, tetrahydrofuranyl, tetrahydrothienyl, thiadiazolidinyl, and trithianyl.
[0214] The term “heteroaryl” is intended to include aromatic ring systems containing 5 or more ring atoms, of which, one or more is a heteroatom. In some embodiments, the heteroatom is nitrogen, oxygen, or sulfur. In some embodiments, heteroaryl groups include mono-, bi- and tricyclic ring systems having from 5 to 16, from 5 to 14, from 5 to 12, from 5 to 10, from 5 to 8, or from 5 to 6 ring atoms. Heteroaryl groups include, but are not limited to, pyrrolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, isoxazolyl, thiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, thiophenyl, benzothiophenyl, furanyl, benzofuranyl, indolyl, azaindolyl (pyrrolopyridinyl), indazolyl, benzimidazolyl, pyrazolopyridinyl, triazolopyridinyl, benzotriazolyl, benzoxazolyl, benzothiazolyl, imidazopyridinyl, isoxazolopyridinylxanthinyl, guaninyl, quinolinyl, isoquinolinyl, tetrahydroquinolinyl, quinoxalinyl, and quinazolinyl. Heteroaryl groups include fused ring systems in which all of the rings are aromatic, for example, indolyl, and fused ring systems in which only one of the rings is aromatic, for example, 2,3-dihydroindolyl.
[0215] The term “halo” or “halogen” is intended to include F, C1, Br, and I.
[0216] The term “heteroatom” is intended to include oxygen, nitrogen, sulfur, or phosphorus. In some embodiments, the heteroatom is selected from the group consisting of oxygen, nitrogen, and sulfur.
[0217] As used herein, the term “substituted” is intended to mean that one or more hydrogen atoms in the group indicated is replaced with one or more independently selected suitable substituents, provided that the normal valency of each atom to which the substituent(s) are attached is not exceeded, and that the substitution results in a stable compound. In some embodiments, optional substituents in the compounds described herein include but are not limited to halo, CN, NO2, OH, NH2, NHR100, NR100R200, C1-6haloalkyl, C1-6haloalkoxy, C(O)NH2, C(O)NHR100, C(O)NR100R200, SO2R100, OR100, SR100, S(O)R100, C(O)R100, and C1-6 aliphatic; wherein R100 and R200 are each independently C1-6 aliphatic, for example C1-6alkyl.
[0218] The term “carboxyl protecting group” as used herein is intended to mean a group that is capable of being readily removed to provide the OH group of a carboxyl group and protects the carboxyl group against undesirable reaction during synthetic procedures. Such protecting groups are described in Protective Groups in Organic Synthesis edited by T. W. Greene et al. (John Wiley & Sons, 1999) and ‘Amino Acid—Protecting Groups’ by Fernando Albericio (with Albert Isidro-Llobet and Mercedes Alvarez) Chemical Reviews 2009 (109) 2455-2504. Examples include, but are not limited to, alkyl and silyl groups, for example methyl, ethyl, tert-butyl, methoxymethyl, 2,2,2-trichloroethyl, benzyl, diphenylmethyl, trimethylsilyl, and tert-butyldimethylsilyl, and the like.
[0219] The term “amine protecting group” as used herein is intended to mean a group that is capable of being readily removed to provide the NH2 group of an amine group and protects the amine group against undesirable reaction during synthetic procedures. Such protecting groups are described in Protective Groups in Organic Synthesis edited by T. W. Greene et al. (John Wiley & Sons, 1999) and ‘Amino Acid—Protecting Groups’ by Fernando Albericio (with Albert Isidro-Llobet and Mercedes Alvarez) Chemical Reviews 2009 (109) 2455-2504. Examples include, but are not limited to, acyl and acyloxy groups, for example acetyl, chloroacetyl, trichloroacetyl, o-nitrophenylacetyl, o-nitrophenoxy-acetyl, trifluoroacetyl, acetoacetyl, 4-chlorobutyryl, isobutyryl, picolinoyl, aminocaproyl, benzoyl, methoxy-carbonyl, 9-fluorenylmethoxycarbonyl, 2,2,2-trifluoroethoxycarbonyl, 2-trimethylsilylethoxy-carbonyl, tert-butyloxycarbonyl, benzyloxycarbonyl, p-nitrobenzyloxycarbonyl, 2,4-dichloro-benzyloxycarbonyl, and the like. Further examples include Cbz (carboxybenzyl), Nosyl (o- or p-nitrophenylsulfonyl), Bpoc (2-(4-biphenyl)isopropoxycarbonyl) and Dde (1-(4,4-dimethyl-2,6-dioxohexylidene)ethyl).
[0220] The term “carboxamide protecting group” as used herein is intended to mean a group that is capable of being readily removed to provide the NH2 group of a carboxamide group and protects the carboxamide group against undesirable reaction during synthetic procedures. Such protecting groups are described in Protective Groups in Organic Synthesis edited by T. W. Greene et al. (John Wiley & Sons, 1999) and ‘Amino Acid-Protecting Groups’ by Fernando Albericio (with Albert Isidro-Llobet and Mercedes Alvarez) Chemical Reviews 2009 (109) 2455-2504. Examples include, but are not limited to, 9-xanthenyl (Xan), trityl (Trt), methyltrityl (Mtt), cyclopropyldimethylcarbinyl (Cpd), and dimethylcyclopropylmethyl (Dmcp).
[0221] As used herein, the term “and/or” means “and”, or “or”, or both.
[0222] The term “(s)” following a noun contemplates the singular and plural form, or both.
[0223] The term “ester” refers to a carboxylic acid group where the hydrogen of the hydroxyl group has been replaced by a saturated, straight-chain (i.e. linear) or branched hydrocarbon group. Specific examples of alkyl groups are methyl, ethyl, propyl, iso-propyl, n-butyl, iso-butyl, sec-butyl, tert-butyl, n-pentyl, iso-pentyl, n-hexyl and 2,2-dimethylbutyl. The alkyl group may be a C1-C6 alkyl group. As used herein a wording defining the limits of a range of length such as, for example, “from 1 to 5” means any integer from 1 to 5, i.e. 1, 2, 3, 4 and 5. In other words, any range defined by two integers explicitly mentioned is meant to comprise and disclose any integer defining said limits and any integer comprised in said range. The alkyl group may be a branched alkyl group.
[0224] It is intended that reference to a range of numbers disclosed herein (for example, 1 to 10) also incorporates reference to all rational numbers within that range (for example, 1, 1.1, 2, 3, 3.9, 4, 5, 6, 6.5, 7, 8, 9, and 10) and also any range of rational numbers within that range (for example, 2 to 8, 1.5 to 5.5, and 3.1 to 4.7) and, therefore, all sub-ranges of all ranges expressly disclosed herein are hereby expressly disclosed. These are only examples of what is specifically intended and all possible combinations of numerical values between the lowest value and the highest value enumerated are to be considered to be expressly stated in this application in a similar manner.
[0225] As discussed above, the inventors have developed and optimised compounds for the treatment and/or prevention of respiratory diseases or conditions, particularly those associated with an infectious agent, such as bacteria or virus. Specifically, the compounds may provide significant protection against viral replication in the lung when those compounds are administered to the upper respiratory tract. These compounds may have greater efficacy than other known TLR2 agonists. The TLR2 agonist efficacy may also occur without significantly compromising TLR specificity and/or causing significant weight loss in the animal models described herein. Further, the compounds may demonstrate favourable stability, eg within a formulation and/or biological matrix environment, as they may be relatively resistant to hydrolytic and/or enzyme-mediated processes degradation. Compounds of the invention demonstrate improved solution stability compared to other related compounds.
[0226] In one aspect, the present invention provides a compound of Formula (I):
A-Y—B (I)
A-Y—B (I)
-
- [0227] wherein A is:
[0228]
-
- [0229] wherein
- [0230] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, provided that:
- [0231] the sum of b, v, and w is at least 3; and
- [0232] the sum of b and w is from 0 to 7;
- [0233] z is 1 or 2;
- [0234] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0235] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, —S(═O)—, —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0236] R11, R12, Rx, Ry, R14, R15, R16, and R17 are each independently H or C1-C6 aliphatic;
- [0237] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0238] R19 is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0239] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0240] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0241] A2 is an amino acid or a peptide;
- [0242] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0243] Y is
[0244]
-
- [0245] wherein R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0246] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0247] and
- [0248] B comprises or consists of Polyethylene Glycol (PEG),
- [0249] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0250] In some embodiments, v is an integer selected from 2, 3, 4 or 5. In some embodiments, v is 2.
[0251] In some embodiments, Rx, Ry, R11, R12, R13, R14, R15, R16, and R17 are H.
[0252] In some embodiments, Z, and Z2 are the same and selected from the group consisting of —O—, —NR—, —S—, S(═O), S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, OC(═O)O—, NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—.
[0253] In some embodiments, Z1 and Z2 are independently selected from the group consisting of —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—.
[0254] In some embodiments, w is an integer selected from 1-7. In some embodiments, w is 1.
[0255] In some embodiments, b is 0.
[0256] In some embodiments, R19 is selected from the group consisting of H, C1-C6 alkyl, —C(═O) C1-C6 alkyl or —C(═O)C11-C19alkyl.
[0257] In some embodiments, L1 and L2 are independently selected from C5-C21 aliphatic or C4-C20 heteroaliphatic. In some embodiments, L1 and L2 and independently selected from C10-C18 aliphatic or C10-C18 heteroaliphatic. In some embodiments, L1 and L2 are independently selected from C14-alkyl and C15-alkyl. In some embodiments, L1 and L2 are branched C5-21 aliphatic. The branched C5-21 aliphatic group may be branched at the carbon atom bonded to Z1 or Z2.
[0258] In some embodiments, the invention provides a compound of formula (I) wherein:
-
- [0259] v is an integer selected from 2 to 5;
- [0260] b is 0;
- [0261] Rx, Ry, R13, R14, R15, R16, and R17 are H;
- [0262] Z1 and Z2 are independently selected from the group consisting of —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0263] w is an integer selected from 1 to 7;
- [0264] R19 is selected from the group consisting of H, C1-C6 alkyl, —C(═O) C1-C6 alkyl or —C(═O)C11-C19alkyl; and
- [0265] L1 and L2 and independently selected from C10-C18 aliphatic or C10-C18 heteroaliphatic.
[0266] In some embodiments, X is S.
[0267] In some embodiments, X is S(═O).
[0268] In some embodiments, X is S(═O)2.
[0269] In some embodiments, B denotes a substituted PEG.
[0270] In some embodiments, B is a substituted PEG according to the following formula B-I:
[0271]
-
- [0272] wherein
- [0273] n is 3 to 100;
- [0274] m is 1, 2, 3 or 4;
- [0275] p is 2, 3 or 4;
- [0276] q is null or 1;
- [0277] R3 is H, —NH2 or —OH, wherein when q is null, R3 is H and when q is 1, R3 is —NH2 or —OH;
- [0278] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid or derived from a natural alpha amino acid, and has the formula:
[0279]
-
- [0280] wherein R4 is H; and
- [0281] R5 is the side chain, or second hydrogen of the amino acid.
[0282] In some embodiments, B is a substituted PEG according to the following formula B-II:
[0283]
-
- [0284] wherein
- [0285] p is 2, 3 or 4;
- [0286] n is 3 to 100;
- [0287] m is 1, 2, 3 or 4;
- [0288] t is 2, 3 or 4;
- [0289] k is 3 to 100;
- [0290] his 1, 2, 3 or 4;
- [0291] q is null or 1;
- [0292] wherein when q is 1, R3 is —NH2 or —OH;
- [0293] wherein when q is null, R3 is H;
- [0294] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid or derived from a natural alpha amino acid, and has the formula:
[0295]
-
- [0296] wherein R4 is H; and
- [0297] R5 is the side chain, or second hydrogen of the amino acid.
[0298] In some embodiments of the substituted PEG of formula B-I or B-II, q is 1.
[0299] In some embodiments of the substituted PEG of formula B-I or B-II, n may be from 10 to 14, such as 11, or from 24 to 30, such as 27.
[0300] In some embodiments of the substituted PEG of formula B-I or B-II, m is from 1 to 3, such as 2.
[0301] In some embodiments of the substituted PEG of formula B-I or B-II, when q is 1, R3 is —NH2.
[0302] In some embodiments of the substituted PEG of formula B-I or B-II, L is a natural alpha amino acid residue.
[0303] In another aspect, the invention provides a compound comprising a moiety (G) according to the following formula:
[0304]
-
- [0305] wherein R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any of the alkyl hydrogens can be replaced with a halogen;
- [0306] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0307] Z1, L1, Z2, L2, X, b, w, v, z, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18 and R19 are as defined in the compound of formula (I) above;
- [0308] covalently linked to polyethylene glycol (PEG),
- [0309] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0310] In some embodiments, moiety G and PEG are directly linked through the covalent bond denoted by 
. Typically, the PEG is a substituted PEG and covalently linked at one end through an amide linker that includes the carbonyl group connected to the covalent bond denoted by .
. Typically, the PEG is a substituted PEG and covalently linked at one end through an amide linker that includes the carbonyl group connected to the covalent bond denoted by .[0311] In some embodiments, the PEG is a substituted PEG. In some embodiments, the substituted PEG is denoted by the following formula:
[0312]
-
- [0313] wherein
- [0314] n is 3 to 100;
- [0315] m is 1, 2, 3 or 4;
- [0316] p is 2, 3 or 4;
- [0317] q is null or 1;
- [0318] R3 is H, —NH2 or —OH, wherein when q is null, R3 is H and when q is 1, R3 is —NH2 or —OH;
- [0319] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid or derived from a natural alpha amino acid, and has the formula:
[0320]
-
- [0321] wherein R4 is H; and
- [0322] R5 is the side chain, or second hydrogen of the amino acid.
[0323] In some embodiments, when q is 1, R3 is —NH2.
[0324] In some embodiments, L is a natural alpha amino acid residue.
[0325] In one aspect, the present invention provides a compound of formula (VI):
[0326]
-
- [0327] wherein
- [0328] n is 3 to 100;
- [0329] m is 1, 2, 3 or 4;
- [0330] p is 2, 3 or 4;
- [0331] q is null or 1;
- [0332] R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0333] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0334] wherein when q=1, R3 is —NH2 or —OH;
- [0335] wherein when q=0, R3 is H;
- [0336] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid or derived from a natural alpha amino acid, and has the formula:
[0337]
-
- [0338] wherein R4 is H; and
- [0339] R5 is the side chain, or second hydrogen of the amino acid;
- [0340] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, provided that:
- [0341] the sum of b, v, and w is at least 3; and
- [0342] the sum of b and w is from 0 to 7;
- [0343] z is 1 or 2;
- [0344] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0345] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, —S(═O)—, —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0346] R11, R12, Rx, Ry, R14, R15, R16, and R17 at each instance of b, v, w, and z are each independently H or C1-C6 aliphatic;
- [0347] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0348] R19 is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0349] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0350] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0351] A2 is an amino acid or a peptide;
- [0352] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0353] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0354] In some embodiments of the compound of formula (VI), v is 2, 3, 4 or 5, preferably 2 or 3, most preferably 2.
[0355] In some embodiments of the compound of formula (VI), b is 0.
[0356] In some embodiments, of the compound of formula (VI), z is 1.
[0357] In some embodiments, the compound of formula (VI) is denoted by formula (VI′):
[0358]
-
- [0359] wherein Z1, L1, Z2, L2, X, b, w, z, R11, R12, R13, R14, R15, R16, R17, R18 and R19 are as defined in the compound of formula (I) above;
- [0360] R1, R2, p, n, m, L, q and R3 are as defined in the compound of formula (VI) above;
- [0361] v″ is 1, 2, 3 or 4, preferably 1;
- [0362] Rj and Rk are independently selected from H or C1-C6 aliphatic, preferably H; and
- [0363] each instance of Rx″ and Ry″ are independent selected from H or C1-C6 aliphatic, preferably H;
- [0364] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0365] In some embodiments, the compound is a compound of formula (VII):
A-Y—NH—(CH2)p—O—(CH2—CH2—O)n—[(CH2)m—CO-L-]qR3 (VII)
A-Y—NH—(CH2)p—O—(CH2—CH2—O)n—[(CH2)m—CO-L-]qR3 (VII)
-
- [0366] wherein A and Y are as defined for the compound of formula (I), and
- [0367] n is 3 to 100;
- [0368] m is 1, 2, 3 or 4;
- [0369] p is 2, 3 or 4;
- [0370] q is null or 1;
- [0371] wherein when q is 1, R3 is —NH2 or —OH;
- [0372] wherein when q is null, R3 is H;
- [0373] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid residue or derived from a natural alpha amino acid, and has the formula:
[0374]
-
- [0375] wherein R4 is H; and
- [0376] R5 is the side chain, or second hydrogen of the amino acid;
- [0377] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0378] In some embodiments, the compound is a compound of formula (X):
[0379]
-
- [0380] wherein
- [0381] n is 3 to 100;
- [0382] k is 3 to 100;
- [0383] m is 1, 2, 3 or 4;
- [0384] p is 2, 3 or 4;
- [0385] t is 2, 3 or 4;
- [0386] h is 1, 2, 3 or 4;
- [0387] q is null or 1;
- [0388] wherein R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0389] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0390] wherein when q=1, R3 is —NH2 or —OH;
- [0391] wherein when q=0, R3 is H;
- [0392] L is null or consists of 1 to 10 units, wherein each unit is a natural alpha amino acid or derived from a natural alpha amino acid, and has the formula:
[0393]
-
- [0394] wherein R4 is H; and
- [0395] R5 is the side chain, or second hydrogen of the amino acid;
- [0396] b and w are each independently an integer from 0 to 7 and v is an integer from 0 to 5, provided that:
- [0397] the sum of b, v, and w is at least 3; and
- [0398] the sum of b and w is from 0 to 7;
- [0399] z is 1 or 2;
- [0400] X is selected from —S—, —S(═O)— and —S(═O)2—;
- [0401] Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, —S(═O)—, —S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, —OC(═O)O—, —NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
- [0402] R11, R12, Rx, Ry, R14, R15, R16, and R17 at each instance of b, v, w, and z are each independently H or C1-C6 aliphatic;
- [0403] R, R13 and R18 are each independently H or C1-C6 aliphatic;
- [0404] Rig is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
- [0405] L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
- [0406] L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
- [0407] A2 is an amino acid or a peptide;
- [0408] wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
- [0409] or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0410] The present invention also provides for compositions containing a compound of the invention or a pharmaceutically acceptable salt, solvate or prodrug thereof, and a pharmaceutically acceptable carrier, diluent or excipient. Any of the compounds described herein or variations thereof may be included in the compositions of the invention.
[0411] As discussed above, the present invention provides Toll-Like Receptor 2 protein (TLR2) agonist compounds and their compositions. In humans, TLR2 plays a fundamental role in the recognition of pathogens and activation of the innate immunity response. It is encoded by the TLR2 gene and is expressed on the surface of specific cells.
[0412] Without wishing to be bound by any theory or mode of action, it is believed that the compounds of the invention described herein are agonists of TLR2 and show activity by binding at TLR2 and stimulating the innate immune system. The innate immune system forms an immediate defence against pathogens such as pathogens that infect and replicate in cells lining the respiratory tract. Research has shown that agents which stimulate the innate immune system may be useful for limiting respiratory infections, which may provide protection from infections both in isolation and during the period between inoculation and the formation of antibodies and immune cells. Such agents are considered to be useful for the treatment and/or prevention of respiratory infections, or respiratory conditions caused by or associated with infectious agents such as a virus (such as Influenza A) or bacterium (such as pneumonia) in a non-antigen specific manner.
[0413] In this regard, compounds of the invention as described herein may have activity, both activation of human TLR2 and inhibition of viral progression, that is at least comparable to other TLR2 agonists such as Pam2Cys-Ser-K4, Pam2Cys-Ser-Ser-PEG and Pam3Cys-Ser-PEG.
[0414] As used herein, ‘Ser’ refers to the amino acid serine and ‘Cys’ refers to the amino acid cysteine.
[0415] As used herein, ‘PEG’ refers to the polymer compound polyethylene glycol. Unless otherwise defined, reference to ‘PEG’ includes any length polymer of ethylene oxide. Reference to PEG also includes substituted PEG. In some embodiments, substituted PEG may be defined by formulas B-I or B-II as described herein.
[0416] In one aspect, therefore, the present invention provides a method of treating and/or preventing a disease, comprising raising an innate immune response in a subject by administering an effective amount of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof to the subject in need thereof.
[0417] In another aspect, the present invention provides a method of treating and/or preventing a disease caused by an infectious agent, comprising administering to a subject in need thereof an effective amount of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0418] In another aspect, the present invention provides a method of treating and/or preventing a respiratory disease or condition associated with a viral or bacterial infection, comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0419] In another aspect, the present invention provides a method of treating and/or preventing a respiratory infection, comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof. Preferably the method further comprises a step of identifying a subject having a respiratory infection.
[0420] In another aspect, the present invention provides a method for reducing airway inflammation, comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0421] The present invention also provides a method of improving the ability of a subject to control a respiratory disease or condition during a respiratory viral infection, the method comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof. Preferably the infection is not a rhinovirus infection.
[0422] The present invention also provides a method of treating and/or preventing a disease or condition associated with the TLR2 receptor, the method comprising administering to a subject in need thereof a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof.
[0423] The present invention also provides a method of agonising TLR2 activity in a cell, the method comprising contacting the cell with a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof. In some embodiments, the cell is contacted with the compound by administration of the compound or pharmaceutically acceptable salt, solvate or prodrug thereof, or composition comprising the compound, pharmaceutically acceptable salt, solvate or prodrug thereof, to a subject in need thereof. In some embodiments, the cell is provided in the form of a cell culture.
[0424] In another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for raising an innate immune response in a subject.
[0425] In another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a disease caused by an infectious agent.
[0426] In another aspect, the present invention further provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a respiratory disease or condition associated with a viral or bacterial infection in a subject.
[0427] In another aspect, the present invention further provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a respiratory infection in a subject.
[0428] In yet another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a respiratory infection.
[0429] In another aspect, the present invention further provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for reducing airway inflammation.
[0430] In another aspect, the present invention further provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for improving the ability of a subject to control a respiratory disease or condition during a respiratory viral infection. Preferably the infection is not a rhinovirus infection.
[0431] In another aspect, the present invention further provides use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof in the preparation of a medicament for treating and/or preventing a disease or condition associated with the TLR2 receptor.
[0432] In one aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof, for raising an innate immune response in a subject.
[0433] In another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof, for preventing a disease caused by an infectious agent, in a subject.
[0434] In another aspect, the present invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof, for treating and/or preventing a respiratory disease or condition associated with a viral or bacterial infection in a subject.
[0435] In a further aspect, the invention provides for use of a compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof, for (a) treating and/or preventing a respiratory infection in a subject; (b) reducing airway inflammation in a subject; (c) controlling a respiratory disease or condition during a respiratory viral infection in a subject; (d) for treating and/or preventing a disease or condition associated with the TLR2 receptor.
[0436] In any of these aspects, the compound may be administered in a composition. Typically, the composition further comprises a pharmaceutically acceptable carrier, diluent or excipient. The composition may be formulated for administration to the upper and/or lower respiratory tract, for example by inhalation or intranasally.
[0437] In any aspect of the invention, the compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof may be conjugated with other compounds. Other compounds are any of those described herein.
[0438] In any aspect of the invention, the compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof is administered once daily or once weekly.
[0439] In any aspect of the invention, where prevention or prophylaxis is intended or required, the compound is administered to the subject before any clinically or biochemically detectable symptoms of viral infection.
[0440] In any aspect of the invention, administration of the compound of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof to a subject reduces viral load in a subject. Preferably, the viral load is reduced in the respiratory tract, for example the upper and/or lower respiratory tract. Preferably, the viral load is reduced in the lungs.
[0441] In any aspect herein, the infectious agent may be a virus. Preferably, the virus is one associated with infection of the respiratory tract. Even more preferably, the virus is influenza. In any aspect, the virus is not a rhinovirus.
[0442] Influenza (commonly referred to as “the flu”) is an infectious disease caused by RNA viruses of the family Orthomyxoviridae (the influenza viruses) that affects birds and mammals. The most common symptoms of the disease are chills, fever, sore throat, muscle pains, severe headache, coughing, weakness/fatigue and general discomfort.
[0443] The influenza viruses make up three of the five genera of the family Orthomyxoviridae. Influenza Type A and Type B viruses co-circulate during seasonal epidemics and can cause severe influenza infection. Influenza Type C virus infection is less common but can be severe and cause local epidemics.
[0444] Influenza Type A virus can be subdivided into different serotypes or subtypes based on the antibody response to these viruses. Influenza A viruses are divided into subtypes based on two proteins on the surface of the virus: the hemagglutinin (H) and the neuraminidase (N). There are 18 different hemagglutinin subtypes and 11 different neuraminidase subtypes. (H1 through H18 and N1 through N11 respectively.) The sub types that have been confirmed in humans are H1N1, H1N2, H2N2, H3N2, H5N1, H7N2, H7N3, H7N7, H9N2 and H10N7.
[0445] Influenza has an enormous impact on public health with severe economic implications in addition to the devastating health problems, including morbidity and even mortality. Accordingly, there is a need for therapeutic agents which can prevent infection, or reduce severity of infection in individuals.
[0446] In any aspect or embodiment of the invention, the influenza infection for which treatment or prevention is required is an infection with a virus selected from the group consisting of influenza Types A, B or C.
[0447] The term ‘respiratory disease’ or ‘respiratory condition’ refers to any one of several ailments that involve inflammation and affect a component of the respiratory system including the upper (including the nasal cavity, pharynx and larynx) and lower respiratory tract (including trachea, bronchi and lungs). The inflammation in the upper and lower respiratory tract may be associated with or caused by viral infection or an allergen. It is expected that the anti-inflammatory activity of the compounds either alone or when co-administered with a glucocorticoid would make them particularly suitable for treatment of these disease or conditions.
[0448] A symptom of respiratory disease may include cough, excess sputum production, a sense of breathlessness or chest tightness with audible wheeze. Exercise capacity may be quite limited. In asthma the FEV1.0 (forced expiratory volume in one second) as a percentage of that predicted nomographically based on weight, height and age, may be decreased as may the peak expiratory flow rate in a forced expiration. In COPD the FEV1.0 as a ratio of the FVC is typically reduced to less than 0.7. The impact of each of these conditions may also be measured by days of lost work/school, disturbed sleep, requirement for bronchodilator drugs, requirement for glucocorticoids including oral glucocorticoids.
[0449] The existence of, improvement in, treatment of or prevention of a respiratory disease may be determined by any clinically or biochemically relevant method of the subject or a biopsy therefrom. For example, a parameter measured may be the presence or degree of lung function, signs and symptoms of obstruction; exercise tolerance; night time awakenings; days lost to school or work; bronchodilator usage; Inhaled corticosteroid (ICS) dose; oral glucocorticoid (GC) usage; need for other medications; need for medical treatment; hospital admission.
[0450] As used herein, the term respiratory infection means an infection by virus or bacteria anywhere in the respiratory tract. Examples of respiratory infection include but are not limited to colds, sinusitis, throat infection, tonsillitis, laryngitis, bronchitis, pneumonia or bronchiolitis. Preferably, in any embodiment of the invention the respiratory infection is a cold.
[0451] An individual may be identified as having a respiratory tract infection by viral testing and may exhibit symptoms of itchy watery eyes, nasal discharge, nasal congestion, sneezing, sore throat, cough, headache, fever, malaise, fatigue and weakness. In one aspect, a subject having a respiratory infection may not have any other respiratory condition. Detection of the presence or amount of virus may be by PCR/sequencing of RNA isolated from clinical samples (nasal wash, sputum, BAL) or serology.
[0452] The term “pharmaceutically acceptable” may be used to describe any pharmaceutically acceptable salt, hydrate or prodrug, or any other compound which upon administration to a subject, is capable of providing (directly or indirectly) a compound of the invention as described herein, or a pharmaceutically acceptable salt, solvate or prodrug thereof, or an active metabolite or residue thereof.
[0453] Suitable pharmaceutically acceptable salts may include, but are not limited to, salts of pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, nitric, carbonic, boric, sulfamic, and hydrobromic acids, or salts of pharmaceutically acceptable organic acids such as acetic, propionic, butyric, tartaric, maleic, hydroxymaleic, fumaric, malic, citric, lactic, mucic, gluconic, benzoic, succinic, oxalic, phenylacetic, methanesulphonic, toluenesulphonic, benzenesulphonic, salicylic, sulphanilic, aspartic, glutamic, edetic, stearic, palmitic, oleic, lauric, pantothenic, tannic, ascorbic and valeric acids.
[0454] Base salts may include, but are not limited to, those formed with pharmaceutically acceptable cations, such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine. General information on types of pharmaceutically acceptable salts and their formation is known to those skilled in the art and is as described in general texts such as “Handbook of Pharmaceutical salts” P. H. Stahl, C. G. Wermuth, 1st edition, 2002, Wiley-VCH.
[0455] In the case of compounds that are solids, it will be understood by those skilled in the art that the inventive compounds, agents, solvates and salts may exist in different crystalline or polymorphic forms, all of which are intended to be within the scope of the present invention and specified formulae.
[0456] The term “polymorph” includes any crystalline form of compounds of the invention as described herein, such as anhydrous forms, hydrous forms, solvate forms and mixed solvate forms.
[0457] It will be understood that compounds of the invention may possess a chiral centre and may therefore exist in an R- or S-configuration. The compounds may be provided in the form of a racemate or in an enatio- or diastereo-enriched form. Enantio- and diastereo-enriched forms of the compounds may be obtained either through asymmetric synthesis, the incorporation of chiral pool materials or through a stereoselective resolution. The compounds may therefore be provided as a purified enantiomer or diastereomer, or as a mixture of any ratio thereof. The isomers may be separated conventionally by chromatographic methods or using a resolving agent. Alternatively the individual isomers may be prepared by asymmetric synthesis using chiral intermediates. Where the compound has a carbon-carbon double bond, it may occur in Z- or E-form and all isomeric forms of the compounds being included in the present invention.
[0458] The compounds of the invention are intended to include, where applicable, solvated as well as unsolvated forms of the compounds. As used herein, the term “solvate” refers to a complex of variable stoichiometry formed by association of a solvent with a compound of the invention. The solvate may therefore comprise sub-stoichiometric amounts of the solvent, equimolar amounts of the solvent or super-stoichiometric amounts of the solvent relative to the compound of the invention. Such solvents for the purpose of the invention may not interfere with the biological activity of the solute. Examples of suitable solvents include, but are not limited to, water, methanol, ethanol and acetic acid. Preferably the solvent used is a pharmaceutically acceptable solvent. Examples of suitable pharmaceutically acceptable solvents include, without limitation, water, ethanol and acetic acid. Most preferably the solvent used is water. Solvates wherein the solvent is water may be referred to as hydrates.
[0459] Basic nitrogen-containing groups may be quarternised with such agents as lower alkyl halide, such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides; dialkyl sulfates like dimethyl and diethyl sulfate; and others.
[0460] The compounds as described herein are to also include isotope variations, such as the replacement of hydrogen for deuterium.
[0461] Compounds of the present invention may exist in and be isolated in optically active and racemic forms. As would be understood by a person skilled in the art, the present invention is intended to encompass any racemic, optically active or stereoisomeric form, or mixtures thereof, of compounds of the invention which possess the useful properties described herein. It is well known in the art how to prepare such forms (for example, by resolution of racemic mixtures by recrystallization, by synthesis from optically-active starting materials, by chiral synthesis, or by chiral chromatographic separation). In one preferred embodiment, with regard to the carbon shown with a * below, the compound of the present invention is provided in a racemic mixture. In another preferred aspect, the compound of the present invention contains
[0462]
-
- [0463] provided with excess of, or only, the L-configuration or naturally occurring amino acid.
[0464] In any aspect or embodiment of the invention, a compound of the present invention may be provided in a chiral form enriched at a chiral centre at the following carbon atom (shown at *) of moiety A:
[0465]
-
- [0466] wherein the chiral centre is in the R configuration. In some embodiments, this stereoisomer of the compound may be depicted as:
[0467]
-
- [0468] wherein L1, L2, Z1, Z2, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18, R19, b, v and z are as defined for the compound of Formula (I) and w is 1. Other stereocentres in these compounds may be racemic or enriched in either the R or S configuration.
[0469] In any aspect or embodiment of the invention, a compound of the present invention may be provided in a chiral form enriched at a chiral centre at the following carbon atom (shown at *) of moiety A:
[0470]
-
- [0471] wherein the chiral centre is in the S configuration. In some embodiments, moiety A of this stereoisomer of the compound may be depicted as:
[0472]
-
- [0473] wherein L1, L2, Z1, Z2, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18, R19, b, v, w, and z are as defined for the compound or Formula (I). Other stereocentres in these compounds may be racemic or enriched in either the R or S configuration.
[0474] In any aspect or embodiment of the invention, a compound of the present invention may be provided in a chiral form enriched at a chiral centre at the following carbon atom (shown at **) of moiety A:
[0475]
-
- [0476] wherein the chiral centre is in the L configuration. A compound in this form may also be referred to as an L-Cys analogue stereoisomer of a compound of the invention. In some embodiments, this stereoisomer of the compound may be depicted as:
[0477]
-
- [0478] wherein L1, L2, Z1, Z2, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18, R19, b, v, w, and z are as defined for the compound or Formula (I). Other stereocentres in these compounds may be racemic or enriched in either the R or S configuration.
[0479] In any aspect or embodiment of the invention, a compound of the present invention may be provided in a chiral form enriched at a chiral centre at the following carbon atom (shown at **) of moiety A:
[0480]
-
- [0481] wherein the chiral centre is in the D configuration. A compound in this form may also be referred to as a D-Cys analogue stereoisomer of a compound of the invention. In some embodiments, moiety A of this stereoisomer of the compound may be depicted as:
[0482]
-
- [0483] wherein L1, L2, Z1, Z2, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18, R19, b, v and z are as defined for the compound or Formula (I) and w is 1. Other stereocentres in these compounds may be racemic or enriched in either the R or S configuration.
[0484] In any aspect or embodiment of the invention, a compound of the present invention may be provided in a chiral form enriched at chiral centres at the following carbon atoms (shown at * and **) of moiety A:
[0485]
-
- [0486] wherein the chiral centre * is in the R configuration and the chiral centre ** is in the R configuration. A compound in this form may also be referred to as an R,R-Cys analogue stereoisomer of a compound of the invention. In some embodiments, this stereoisomer of the compound may be depicted as:
[0487]
-
- [0488] wherein L1, L2, Z1, Z2, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18, and R19 are as defined for the compound of Formula (I), b is 0, v is 1, z is 1 and w is 1. Other stereocentres in these compounds may be racemic or enriched in either the R or S configuration.
[0489] In any aspect or embodiment of the invention, a compound of the present invention may be provided in a chiral form enriched at chiral centres at the following carbon atoms (shown at * and **) of moiety A:
[0490]
-
- [0491] wherein the chiral centre * is in the S configuration and the chiral centre ** is in the R configuration. A compound in this form may also be referred to as an S,R-Cys analogue stereoisomer of a compound of the invention. In some embodiments, moiety A of this stereoisomer of the compound may be depicted as:
[0492]
-
- [0493] wherein L1, L2, Z1, Z2, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18, and R19 are as defined for the compound of Formula (I), b is 0, v is 1, z is 1 and w is 1. Other stereocentres in these compounds may be racemic or enriched in either the R or S configuration.
[0494] In any aspect or embodiment of the invention, a compound of the present invention may be provided in a chiral form enriched at chiral centres at the following carbon atoms (shown at * and **) of moiety A:
[0495]
-
- [0496] wherein the chiral centre * is in the S configuration and the chiral centre ** is in the S configuration. A compound in this form may also be referred to as an S,S-Cys analogue stereoisomer of a compound of the invention. In some embodiments, moiety A of this stereoisomer of the compound may be depicted as:
[0497]
-
- [0498] wherein L1, L2, Z1, Z2, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18, and R19 are as defined for the compound of Formula (c), b is 0, v is 1, z is i and w is i. Other stereocentres in these compounds may be racemic or enriched in either the R or S configuration.
[0499] In any aspect or embodiment of the invention, a compound of the present invention may be provided in a chiral form enriched at chiral centres at the following carbon atoms (shown at * and **) of moiety A:
[0500]
-
- [0501] wherein the chiral centre * is in the R configuration and the chiral centre ** is in the S configuration. A compound in this form may also be referred to as an R,S-Cys analogue stereoisomer of a compound of the invention. In some embodiments, moiety A of this stereoisomer of the compound may be depicted as:
[0502]
-
- [0503] wherein L1, L2, Z1, Z2, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18, and R19 are as defined for the compound of Formula (I), b is 0, v is 1, z is 1 and w is 1. Other stereocentres in these compounds may be racemic or enriched in either the R or S configuration.
[0504] In any aspect or embodiment of the invention, a compound of the present invention comprises a chiral centre in the Y moiety of the compound (shown at ***):
[0505]
-
- [0506] wherein the chiral centre is in the L-configuration. A compound in this form may also be referred to as an L-Y stereoisomer of a compound of the invention. The stereochemistry of the chiral centre in the L-Y stereoisomer may be combined without limitation with other chiral centres of the compound, such as in moiety A as described herein.
[0507] In any aspect or embodiment of the invention, a compound of the present invention comprises a chiral centre in the Y moiety of the compound (shown at ***):
[0508]
-
- [0509] wherein the chiral centre is in the D-configuration. A compound in this form may also be referred to as an D-Y stereoisomer of a compound of the invention. The stereochemistry of the chiral centre in the D-Y stereoisomer may be combined without limitation with other chiral centres of the compound, such as in moiety A as described herein.
[0510] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in a composition is the R diastereomer around the chiral centre denoted * in the moiety A of the compound described herein.
[0511] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in a composition is the S diastereomer around the chiral centre denoted * in the moiety A of the compound described herein.
[0512] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the R diastereomer around the chiral centre denoted ** in the moiety A of the compound described herein.
[0513] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the S diastereomer around the chiral centre denoted ** in the moiety A of the compound described herein.
[0514] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the R diastereomer around the chiral centre denoted *** of the Y moiety.
[0515] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the S diastereomer around the chiral centre denoted *** of the Y moiety.
[0516] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the R diastereomer around the chiral centre denoted * in moiety A, the R diastereomer around the chiral centre denoted ** in moiety A and the R diastereomer around the chiral centre denoted *** in the Y moiety.
[0517] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the R diastereomer around the chiral centre denoted * in moiety A, the S diastereomer around the chiral centre denoted ** in moiety A and the R diastereomer around the chiral centre denoted *** in the Y moiety.
[0518] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the R diastereomer around the chiral centre denoted * in moiety A, the R diastereomer around the chiral centre denoted ** in moiety A and the S diastereomer around the chiral centre denoted *** in the Y moiety.
[0519] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the R diastereomer around the chiral centre denoted * in moiety A, the S diastereomer around the chiral centre denoted ** in moiety A and the S diastereomer around the chiral centre denoted *** in the Y moiety.
[0520] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the S diastereomer around the chiral centre denoted * in moiety A, the R diastereomer around the chiral centre denoted ** in moiety A and the R diastereomer around the chiral centre denoted *** in the Y moiety.
[0521] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the S diastereomer around the chiral centre denoted * in moiety A, the S diastereomer around the chiral centre denoted ** in moiety A and the R diastereomer around the chiral centre denoted *** in the Y moiety.
[0522] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the S diastereomer around the chiral centre denoted * in moiety A, the R diastereomer around the chiral centre denoted ** in moiety A and the S diastereomer around the chiral centre denoted *** in the Y moiety.
[0523] In any aspect of the present invention, 1%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98%, 99% or more than 99% of the compound present in the composition is the S diastereomer around the chiral centre denoted * in moiety A, the S diastereomer around the chiral centre denoted ** in moiety A and the S diastereomer around the chiral centre denoted *** in the Y moiety.
[0524] The compounds of the invention demonstrate improved solution stability under accelerated degradation conditions relative to other related compounds. Solution stability may be assess by measuring the concentration of compound in a solution at day 0 and comparing the concentration of the compound after a period of time, such as 14 days. Solution stability may be assessed under ambient conditions, eg 25° C. and 65% relative humidity, or under accelerated conditions, eg 40° C. and 75% relative humidity. Typically, an acceptable stability for a compound of interest for the indications of the invention when stored for 14 days in solution under accelerated conditions would be retention of at least 80% concentration in the solution of the compound relative to the initial concentration of the compound in the solution. Typically, the solution may be a saline solution (eg 0.9% aq. NaCl) or phosphate-buffered saline (PBS; eg pH 7.4). In some embodiments, the compounds of the invention after 14 day storage in pH 7.4 PBS buffer is at least about 80%, 85%, 90%, 91%, 92% or greater relative to the amount of compound detected in the solution at day 0.
[0525] A “prodrug” is a compound that may not fully satisfy the structural requirements of the compounds provided herein, but is modified in vivo, following administration to a subject or patient, to produce a compound of the invention as described herein. For example, a prodrug may be an acylated derivative of a compound as provided herein. Prodrugs include compounds wherein hydroxy, carboxy, amine or sulfhydryl groups are bonded to any group that, when administered to a mammalian subject, cleaves to form a free hydroxy, carboxy, amino, or sulfhydryl group, respectively. Examples of prodrugs include, but are not limited to, acetate, formate, phosphate and benzoate derivatives of alcohol and amine functional groups within the compounds provided herein. Prodrugs of the compounds provided herein may be prepared by modifying functional groups present in the compounds in such a way that the modifications are cleaved in vivo to generate the parent compounds.
[0526] Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (eg, two, three or four) amino acid residues which are covalently joined to free amino, and amido groups of compounds of the invention. The amino acid residues include the 20 naturally occurring amino acids commonly designated by three letter symbols and also include, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvlin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone. Prodrugs also include compounds wherein carbonates, carbamates, amides and alkyl esters which are covalently bonded to the above substituents of a compound of the invention.
[0527] The compounds of the invention as described herein or a pharmaceutically acceptable salt, solvate or prodrug thereof may be covalent irreversible or covalent reversible agonists of the active site of a protein.
[0528] Where a protecting group (PG) is referred to, a person skilled in the art would readily understand what type of protecting group would be suitable. Examples of suitable amine protecting groups for the purposes described herein include (but are not limited to) tert-butyloxycarbonyl (t-Boc) and 9H-fluoren-9-ylmethoxycarbonyl (Fmoc).
[0529] Pharmaceutical compositions may be formulated from compounds of the invention as described herein for any appropriate route of administration including, for example, topical (for example, transdermal or ocular), oral, buccal, respiratory (for example, nasal, inhalation, intrapulmonary), vaginal, rectal or parenteral administration. The term parenteral as used herein includes subcutaneous, intradermal, intravascular (for example, intravenous), intramuscular, spinal, intracranial, intrathecal, intraocular, periocular, intraorbital, intrasynovial and intraperitoneal injection, as well as any similar injection or infusion technique. Suitable oral forms include, for example, tablets, troches, lozenges, aqueous or oily suspensions, dispersible powders or granules, emulsions, hard or soft capsules, or syrups or elixirs. For intravenous, intramuscular, subcutaneous, or intraperitoneal administration, one or more compounds may be combined with a sterile aqueous solution which is preferably isotonic with the blood of the recipient. Such formulations may be prepared by dissolving solid active ingredient in water containing physiologically compatible substances such as sodium chloride or glycine, and having a buffered pH compatible with physiological conditions to produce an aqueous solution, and rendering said solution sterile. The formulations may be present in unit or multi-dose containers such as sealed ampoules or vials. Examples of components are described in Martindale—The Extra Pharmacopoeia (Pharmaceutical Press, London 1993) and Martin (ed.), Remington's Pharmaceutical Sciences. Preferably, the compositions are formulated for administration to the respiratory tract, for example, by intrapulmonary administration (eg. inhalation) or intranasal administration. The compositions may be administered to the upper and/or lower respiratory tract.
[0530] Preferably, the pharmaceutical compositions are in a form suitable for administration via the respiratory route, and may be in any form such as a powder, liquid or suspension. Such compositions may target tissue including pulmonary tissue (including alveolus, terminal bronchiole, bronchiole, and bronchus) or the nasal cavity (including paranasal cavity, frontal sinus, ethmoid sinus, maxillary sinus, sphenoidal sinus, superior turbinate, middle turbinate, and inferior turbinate).
[0531] In the context of this specification the term “administering” and variations of that term including “administer” and “administration”, includes contacting, applying, delivering or providing a compound or composition of the invention to an organism, or a surface by any appropriate means.
[0532] The dose of the biologically active compound according to the invention may vary within wide limits and may be adjusted to individual requirements. Active compounds according to the present invention are generally administered in a therapeutically effective amount.
[0533] A composition according to the present invention is to be administered in an effective amount. The phrase ‘therapeutically effective amount’ or ‘effective amount’ generally refers to an amount of a compound of the invention described herein, a pharmaceutically acceptable salt, polymorph or prodrug thereof of the present invention that (i) treats the particular disease, condition, or disorder, (ii) attenuates, ameliorates, or eliminates one or more symptoms of the particular disease, condition, or disorder, or (iii) delays the onset of one or more symptoms of the particular disease, condition, or disorder described herein. Undesirable effects, e.g. side effects, are sometimes manifested along with the desired therapeutic effect; hence, a practitioner balances the potential benefits against the potential risks in determining what is an appropriate “effective amount”.
[0534] The exact amount required will vary from subject to subject, depending on the species, age and general condition of the subject, mode of administration and the like. Thus, it may not be possible to specify an exact “effective amount”. However, an appropriate “effective amount” in any individual case may be determined by one of ordinary skill in the art using only routine experimentation. In one aspect, the dose administered to a subject is any dose that reduces viral load. Preferably, the dose does not significantly increase inflammation, for example does not significantly increase absolute neutrophil numbers or the proportion of neutrophils of total BAL cells in the lung. The terms “therapeutically effective amount” or “effective amount” may also refer to an amount of the compound of Formula (I), Formula (II), Formula (III) Formula (IV) and/or Formula (V) or a pharmaceutically acceptable salt, solvate or prodrug thereof, that results in an improvement or remediation of the symptoms of a respiratory infection, or respiratory disease or condition associated with a viral or bacterial infection.
[0535] In some embodiments, an effective amount for a human subject lies in the range of about 250 nmoles/kg body weight/dose to 0.005 nmoles/kg body weight/dose. Preferably, the range is about 250 nmoles/kg body weight/dose to 0.05 nmoles/kg body weight/dose. In some embodiments, the body weight/dose range is about 250 nmoles/kg, to 0.1 nmoles/kg, about 50 nmoles/kg to 0.1 nmoles/kg, about 5 nmoles/kg to 0.1 nmol/kg, about 2.5 nmoles/kg to 0.25 nmoles/kg, or about 0.5 nmoles/kg to 0.1 nmoles/kg body weight/dose. In some embodiments, the amount is at, or about, 250 nmoles, 50 nmoles, 5 nmoles, 2.5 nmoles, 0.5 nmoles, 0.25 nmoles, 0.1 nmoles or 0.05 nmoles/kg body weight/dose of the compound. Dosage regimes are adjusted to suit the exigencies of the situation and may be adjusted to produce the optimum therapeutic dose.
[0536] Compounds of the invention described herein may be compositions formulated as inhaled formulations, including dry powder, sprays, mists, or aerosols. This may be particularly preferred for treatment of a respiratory infection. For inhalation formulations, the composition or combination provided herein may be delivered via any inhalation methods known to a person skilled in the art. Such inhalation methods and devices include, but are not limited to, metered dose inhalers with propellants such as CFC or HFA or propellants that are physiologically and environmentally acceptable. Other suitable devices are breath operated inhalers, multidose dry powder inhalers and aerosol nebulizers. Aerosol formulations for use in the subject method typically include propellants, surfactants and co-solvents and may be filled into conventional aerosol containers that are closed by a suitable metering valve.
[0537] Inhalant compositions may comprise liquid or powdered compositions containing the active ingredient that are suitable for nebulization and intrabronchial use, or aerosol compositions administered via an aerosol unit dispensing metered doses. Suitable liquid compositions comprise the active ingredient in an aqueous, pharmaceutically acceptable inhalant solvent such as isotonic saline or bacteriostatic water. The solutions are administered by means of a pump or squeeze-actuated nebulized spray dispenser, or by any other conventional means for causing or enabling the requisite dosage amount of the liquid composition to be inhaled into the patient's lungs. Suitable formulations, wherein the carrier is a liquid, for administration, as for example, a nasal spray or as nasal drops, include aqueous or oily solutions of the active ingredient. Alternatively, the composition may be a dry powder and administered to the respiratory tract as defined herein.
[0538] It will be understood, that the specific dose level for any particular patient will depend upon a variety of factors including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, route of administration, and rate of excretion, drug combination (i.e. other drugs being used to treat the patient), and the severity of the particular disorder undergoing therapy.
[0539] It will be understood, however, that the specific dose level for any particular subject will depend upon a variety of factors including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, route of administration, and rate of excretion, drug combination (i.e. other drugs being used to treat the subject), and the severity of the particular disorder undergoing therapy. The dosage will generally be lower if the compounds are administered locally rather than systemically, and for prevention rather than for treatment. Such treatments may be administered as often as necessary and for the period of time judged necessary by the treating physician. A person skilled in the art will appreciate that the dosage regime or therapeutically effective amount of the compound of the invention, or a pharmaceutically acceptable salt, solvate or prodrug thereof, to be administered may need to be optimized for each individual. The pharmaceutical compositions may contain active ingredient in the range of about 0.1 to 2000 mg, preferably in the range of about 0.5 to 500 mg and most preferably between about 1 and 200 mg. A daily dose of about 0.01 to 100 mg/kg body weight, preferably between about 0.1 and about 50 mg/kg body weight, may be appropriate. The daily dose can be administered in a single or multiple doses per day.
[0540] It will also be appreciated that different dosages may be required for treating different disorders.
[0541] As used herein, the terms “treatment” or “treating” of a subject includes the application or administration of a compound or composition of the invention to a subject (or application or administration of a compound of the invention to a cell or tissue from a subject) with the purpose of delaying, slowing, stabilizing, curing, healing, alleviating, relieving, altering, remedying, less worsening, ameliorating, improving, or affecting the disease or condition, the symptom of the disease or condition, or the risk of (or susceptibility to) the disease or condition. The term “treating” refers to any indication of success in the treatment or amelioration of an injury, pathology or condition, including any objective or subjective parameter such as abatement; remission; lessening of the rate of worsening; lessening severity of the disease; stabilization, diminishing of symptoms or making the injury, pathology or condition more tolerable to the subject; slowing in the rate of degeneration or decline; making the final point of degeneration less debilitating; or improving a subject's physical or mental well-being.
[0542] As used herein, “preventing” or “prevention” is intended to refer to at least the reduction of likelihood of the risk of (or susceptibility to) acquiring a disease or disorder (i.e., causing at least one of the clinical symptoms of the disease not to develop in a patient that may be exposed to or predisposed to the disease but does not yet experience or display symptoms of the disease). Biological and physiological parameters for identifying such patients are provided herein and are also well known by physicians.
[0543] “Subject” includes any human or non-human animal. Thus, in addition to being useful for human treatment, the compounds of the present invention may also be useful for veterinary treatment of mammals, including companion animals and farm animals, such as, but not limited to dogs, cats, horses, cows, sheep, and pigs.
[0544] The compounds of the present invention may be administered along with a pharmaceutical carrier, diluent or excipient as described above.
[0545]
| Compound | |
|---|---|
| Compound Structure | name |
| Compound 1 |
| Compound 2 |
| Compound 3 |
| Compound 4 |
| Compound 5 |
| Compound 6 |
| Compound 7 |
| Compound 8 |
| Compound 9 |
| Compound 10 |
| Compound 11 |
| Compound 12 |
| Compound 13 |
| Compound 14 |
| Compound 15 |
| Compound 16 |
| Compound 17 |
| Compound 18 |
| Compound 19 |
| Compound 20 |
| Compound 21 |
| Compound 22 |
| Compound 23 |
| Compound 24 |
| Compound 25 |
| Compound 26 |
| Compound 27 |
| Compound 28 |
| Compound 29 |
| Compound 30 |
| Compound 31 |
| Compound 32 |
| Compound 33 |
| Compound 34 |
| Compound 35 |
| Compound 36 |
[0546] It will be understood that the invention disclosed and defined in this specification extends to all alternative combinations of two or more of the individual features mentioned or evident from the text or drawings. All of these different combinations constitute various alternative aspects of the invention.
Example 1—Synthesis of Compounds
Example 1.1—Synthesis a Using Fmoc Solid Phase Chemistry
[0547] Compounds of the invention, including those according to Formula (I), may be provided by coupling a compound of the formula A-1:
[0548]
-
- [0549] wherein L1, L2, Z1, Z2, v, b, w, z, Rx, Ry, R11, R12, R13, R14, R15, R16, R17, R18 and X have the meanings as defined for any compound of the invention defined herein and R16 is an amino protecting group
- [0550] with a compound of formula YB-1:
[0551]
-
- [0552] wherein
- [0553] Y′ is
[0554]
-
- [0555] wherein R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0556] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0557] B′ is a Polyethylene Glycol (PEG); and
[0558]
-
- [0559] is a solid support resin.
[0560] In some embodiments, B′ comprises a substituted PEG of Formula B-I. In these embodiments, the following sequence of solid phase reactions may be employed:
-
- [0561] a) Optionally coupling 1 to 10 alpha amino acids or compounds derived from a natural alpha amino acid, that constitutes L, to a solid phase resin using Fmoc chemistry
- [0562] b) Coupling PG-NH—(CH2)p—O—(CH2CH2O)n—(CH2)m—COOH to a solid phase resin or substituted resin if L is present, wherein PG represents an amino protecting group compatible with Fmoc chemistry;
- [0563] c) Removing PG;
- [0564] d) Coupling PG-NH—CR13R14—COOH, wherein PG′ represents an amino protecting group compatible with Fmoc chemistry;
- [0565] e) Removing PG′;
- [0566] f) Coupling an acid of the formula (A-I);
- [0567] g) Optionally removing R19 and optionally acylating and/or alkylating to introduce R18 and/or R19; and
- [0568] h) Removing the compound from the solid phase support
[0569] In some embodiments, B′ comprises a substituted PEG according to formula (B-II) and the following sequence of solid phase reactions may be employed:
-
- [0570] a) Optionally coupling 1 to 10 alpha amino acids or compounds derived from a natural alpha amino acid, that constitute L, to a solid phase resin using Fmoc chemistry
- [0571] b) Coupling PG-NH—(CH2)t—O—(CH2CH2O)k—(CH2)h—COOH to a solid phase resin or substituted resin if L is present, wherein PG represents an amino protecting group compatible with Fmoc chemistry;
- [0572] c) Removing PG;
- [0573] d) Coupling PG′-NH—(CH2)p—O—(CH2CH2O)n—(CH2)m—COOH, wherein PG′ represents an amino protecting group compatible with Fmoc chemistry;
- [0574] e) Removing PG′;
- [0575] f) Coupling PG″-NH—CR13R14—COOH, wherein PG″ represents an amino protecting group compatible with Fmoc chemistry;
- [0576] g) Removing PG″;
- [0577] h) Coupling an acid of the formula (A-1);
- [0578] i) Optionally removing R19 and optionally acylating and/or alkylating to incorporate R18 and/or R19; and
- [0579] j) Removing the compound from the solid phase resin.
[0580] It will be appreciated that the exact sequence of events can be varied from that outlined, and additional steps added where necessary and synthetically expedient, for example oxidation of the cysteine sulfur to the sulfoxide.
Example 1.2—Synthesis of Intermediate for Use in the Solid Phase Coupling A
[0581] Some embodiments of the intermediate acid of formula A-II:
[0582]
-
- [0583] wherein L1, L2, X, v, w and R15 are as defined for the compound of formula A-1 above, Z1 and Z2 are independently selected from —NHC(O)—, —C(O)NH—, —OC(O)—, —C(O)O—, —NHC(O)O— and —OC(O)O—;
- [0584] may be prepared by the synthesis shown in Scheme 1.
- [0585] Scheme 1 describes the synthesis of embodiments of the compound of formula A-II, wherein
- [0586] X is S,
- [0587] L1-Z1 are —OC(O)E-Cg′H(g′+2), wherein E is —O— or —NH— and g′ is 11, 12, 13, 14, 15, 16, 17, 18 or 19;
- [0588] L2-Z2 are —OC(O)E-Cg′H(g′+2), wherein E is —O— or —NH— and g′ is 11, 12, 13, 14, 15, 16, 17, 18 or 19; and
- [0589] R19 is PG3, which is an amino protecting group.
[0590]
[0591] Reaction of protected alkene alcohols of the formula (V′), where PG is a suitable protecting group, for example a silyl group such as TBDMS, forms an epoxide of the formula (VI′). It will be appreciated that the epoxide formation may be carried out to give the product racemically or to give enantioenriched material. If a racemic or scalemic mixture of enantiomers is produced preparative chiral chromatography is employed to separate the enantiomers if required.
[0592] Epoxides of the formula (VI′) are reacted with suitably protected cystine analogues, for example tert-butyl N-(((9H-fluoren-9-yl)methoxy)carbonyl)-S—(((R)-2-((((9H-fluoren-9-yl)methoxy)carbonyl)amino)-3-(tert-butoxy)-3-oxopropyl)thio)-D-cysteinate, where PG2 is a tert-butyl ester and PG3 is Fmoc, under reducing conditions to give alcohols of the formula (VII′). It will be appreciated that alcohols of the formula (VII′) can be comprised of more than one stereoisomer and where stereoisomers are present these can be separated by chiral preparative chromatography as required.
[0593] Alcohols of the formula (VII′) can be acylated to give carbonyl containing adducts of the formula (VIII′) using suitable reagents. Where esters are required, acid chlorides can be reacted in the presence of suitable bases and solvents; where carbamates are required isocyanates can be reacted in the presence of suitable bases and solvents and where carbonates are required chloroformates can be reacted in the presence of suitable bases and solvents. Carbonyl containing adducts of the formula (VIII′) can then be deprotected to reveal carboxylic acids of the formula (IX′) using suitable reagents, for example where PG2 is tert-butyl, trifluoroacetic acid can be used to preferentially remove the tert-butyl group.
[0594] Acids of the formula (IX′) can then be used as reagents in solid phase synthesis to add groups of formula Y and B.
Example 1.3—Synthesis B Using Fmoc Solid Phase Chemistry
[0595] Compounds of the invention, including those according to Formula (I), wherein z is 1, w is 1 and b is 0, may be provided by preparing a resin bound peptide of the following formula:
[0596]
-
- [0597] wherein
- [0598] Y′ is
[0599]
-
- [0600] wherein R, and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
- [0601] R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
- [0602] B′ is a Polyethylene Glycol (PEG);
- [0603] PGs is H or a sulphur protecting group, such as tert-butyl; and
[0604]
-
- [0605] is a solid support resin.
[0606] Following optional sulphur deprotection, this resin bound peptide may be reacted with a 1,2-epoxy-alkanol of the following formula:
[0607]
-
- [0608] wherein Rx, Ry and v have the meanings given for Formula (I)
- [0609] to provide an alkylated thiol of formula S-1:
[0610]
-
- [0611] wherein Y′ and B′ have the meaning given above, and v has the meaning given for the compound of formula (I), or a sulfone or sulfoxide thereof.
[0612] The diol moieties of resin bound compound S-1 may be further reacted to provide a compound of the invention, for example, by diol functionalisation with palmitic groups or lauryl carbamate groups, etc.
Example 1.4—Synthesis and Characterisation of Compounds 3, 4, 15 and 16
[0613] Synthesis of compounds 3 and 4. The synthesis of compounds 3 and 4 is depicted below in Scheme 2.
[0614] Fmoc-Gly was added as the first amino acid to the solid support, followed by coupling of Fmoc-NHCH2CH2O—(PEG)11-CH2CH2COOH or Fmoc-NHCH2CH2O—(PEG)27-CH2CH2COOH in 2-fold molar excess in presence of a two-fold excess of Hexafluorophosphate Benzotriazole Tetramethyl Uronium (HBTU), Hydroxybenzotriazole (HOBT) and 4-fold excess of diisopropylethylamine (DIPEA) in 2 ml of dimethylformamide (DMF) for 2 hrs. Fmoc-Ser(tBu)-OH is then coupled to provide intermediate A2, followed by the coupling of Boc-Cys(StBu) A1. The thiol-tert-butyl group on the cysteine residue was removed by incubating the peptide resin in 0.5M of dithiothreitol for 1 hr in DMF at RT. To 250 mg of Boc-Cys-Ser(tBu)CH2CH2O-(PEG)11-CH2CH2C(O)Gly resin or Boc-Cys-Ser(tBu)CH2CH2O-(PEG)27—CH2CH2C(O)Gly resin (0.25 mmole/g, 0.25 g=0.0625 mmole) saturated in DMF was added 250 μl of R—(+)-1,2-epoxy-butan-4-ol [(R)-2-(oxiran-2-yl)ethan-1-ol] (Mw=88.11, d=1.1, 250 μl=3.125 mmol equivalent to a 50 fold excess over the free sulfhydryl group present on the peptide resin) and 25 μl of diisopropylethylamine (DIPEA, Mw=129.2, d=0.74, 25 μl=0.14 mmol). The reaction mixture was left in a water bath at 50° C. for 2 hrs and then thoroughly washed with DMF to provide intermediate A3.
[0615] Palmitic acid (320 mg, 1.25 mmol), DIPCDI (225 uL, 1.5 mmol) and 4-dimethylaminopyridine (DMAP; 15.25 mg, 0.125 mmol) were dissolved in 2 mL of dichloromethane (DCM) then added to the resin-bound BOC-Dhc-peptide resin A3 (0.0625 mmol, 0.25 g) and shaken for 16 h at room temperature. The supernatant was removed by filtration and the solid support thoroughly washed with DCM and dimethylformamide (DMF) to remove any residue of urea before being subjected to the cleavage process as described below.
[0616] The solid support bearing the assembled lipopeptide was exposed to reagent B (93% TFA, 5% water and 2% triisopropylsilane) for 2 hours. To isolate the product, most of the TFA was removed and the residue is then dissolved in 50% acetonitrile and purified immediately using the purification protocol described below or the material was freeze-dried and stored for later purification.
[0617]
[0618] Synthesis of Compound 15 and Compound 16. The synthesis of compounds 15 and 16 was carried out as depicted in Scheme 3. Intermediate A3 was prepared as described for compounds 3 and 4 above.
[0619] Then, to 250 mg of the peptide resin washed with toluene following glycidolation, were added 100 μl of ethylmethylsulfide (Mw=76.16, d=0.842, 100 μl=1.10 mmol) followed by 105 μl of tetradecyl isocyanate (MW=239, d=0.869, 105 μl=0.38 mmol, i.e. 3-fold excess over each of the hydroxyl groups present on the solid support) and finally 210 μl of dibutyltin dilaurate (Mw=631.6, d=1.053, 210 μl=0.35 mmol). The reaction mixture was sparged with nitrogen gas for approximately 5 min and mixed (Intelli-Mixer, RM-2, program F26 used) overnight at room temperature. The reaction mixture was transferred to a 50 ml tube and chloroform added to 50 ml. Following sonication for approximately 5 mins the white precipitate, formed during the reaction, dissolved. The solid support was washed with DMF and acetonitrile and the final product obtained following cleavage (as above) from the support was purified by HPLC.
[0620]
[0621] Synthesis of compound 20. Compound 20 was synthesized by standard Fmoc Solid Phase Peptide Synthesis, starting with Fmoc-RINK MBHA PS Resin. Removal of the Fmoc group after each coupling was achieved using 20% piperidine in DMF. Couplings of Fmoc-Gly-OH (2-fold excess), Fmoc-NH-PEG28-CH2CH2COOH (1.4-fold excess), Fmoc-Ser(tBu)-OH (2-fold excess), and N-(Boc)-S—((R)-2,3-dihydroxybutyl)-L-cysteine (1.5-fold excess) were performed in DMF using equivalent excess of ethyl cyano(hydroxyimino)acetate (Oxyma Pure) and diisopropylcarbodiimide (DIC) as coupling agents. Myristyl Chloroformate coupling was performed using Myristyl Chloroformate (12 eq. vs. moles resin), DIEA (24 eq. vs. moles resin) in dry DCM for 18 hours at room temperature. This coupling was repeated three times (“recoupling”). The first recoupling was done using Myristyl Chloroformate (12 eq. vs. moles resin), NMM (24 eq. vs. moles resin) in dry DCM/THF (85/15) for 18 hours at room temperature. The second recoupling was done using Myristyl Chloroformate (6 eq. vs. moles resin), NMM (12 eq. vs. moles resin) in dry DCM/THF (85/15) for 41 hours at room temperature. Finally the third recoupling was performed using Myristyl Chloroformate (6 eq. vs. moles resin), NMM (12 eq. vs. moles resin) in dry DCM/THF/Toluene (85/15/5) for 21.5 hours at room temperature.
[0622] Cleavage of the peptide from the resin, removal of N-terminal Boc group, and serine side-chain deprotection were achieved by exposure of the resin to a solution of 93% trifluoroacetic acid (TFA), 5% H2O, 3% triisopropylsilane (TIPS) for 1.5 hours. Following the cleavage reaction, the mixture was evaporated and the resulting residue was re-dissolved in 30% acetonitrile/water and lyophilized.
[0623] Synthesis of compound 24. Compound 24 was synthesized by standard Fmoc Solid Phase Peptide Synthesis, starting with Chlorotrityl Chloride Resin with an initial substitution of 1.6 meq/g. The first amino acid, Fmoc-Gly-OH, was loaded on the resin first, using a 0.5-fold molar excess of Fmoc-Gly-OH and DIEA (1.5-fold excess), followed by capping with DMF/MeOH/DIEA (80/10/10), and Fmoc deprotection, to obtain the dry loaded H-Gly-CT Resin with a final substitution of 0.67 meq/g. Removal of the Fmoc group after each coupling was achieved using 20% Piperidine in DMF. Coupling of Fmoc-NH-PEG23-CH2CH2COOH (1.4 eq.) was performed using (7-Azabenzotriazol-1-yloxy)trispyrrolidinophosphonium hexafluorophosphate (PyAOp; 1.4 eq.), diisopropylethylamine (DIEA; 3.2 eq.) in DMF, whereas couplings of Fmoc-Ser(tBu)-OH (2 eq), and N-(Boc)-S—((R)-2,4-dihydroxybutyl)-L-cysteine (1.5 eq.) were performed in DMF using equivalent excess of Oxyma Pure and DIC as coupling agents. Palmitic Acid coupling was performed using palmitic acid (20 eq. vs. moles resin), DIC (20 eq.), DMAP (2 eq.) in DCM/THF (85/15) (v/v) for 24 hours at room temperature.
[0624] Cleavage of the peptide from the resin, removal of N-terminal Boc group, and serine side-chain deprotection were achieved by exposure of the resin to a solution of 93% TFA, 5% H2O, 3% TIPS for 1.5 hours. Following the cleavage reaction, the mixture was evaporated and the resulting residue was re-dissolved in 30% Acetonitrile/Water and lyophilized.
[0625] Synthesis of compound 36. Compound 36 was synthesized by standard Fmoc Solid Phase Peptide Synthesis, starting with Fmoc-RINK MBHA PS Resin. Removal of the Fmoc group after each coupling was achieved using 20% Piperidine in DMF. Couplings of Fmoc-Gly-OH (2-fold excess), Fmoc-NH-PEG28-CH2CH2COOH (1.4-fold excess), Fmoc-Ser(tBu)-OH (2-fold excess), and N-(Boc)-S—((R)-2,3-dihydroxybutyl)-L-cysteine (1.5-fold excess) were performed in DMF using equivalent excess of Oxyma Pure and DIC as coupling agents. 2-Methyl-Palmitic Acid coupling was performed using 2-Methyl-Palmitic Acid (20 eq. vs. moles resin), DIC (20 eq.), DMAP (2 eq.) in DCM/THF (85/15) (v/v) for −20 hours at room temperature.
[0626] Cleavage of the peptide from the resin, removal of N-terminal Boc group, and serine side-chain deprotection were achieved by exposure of the resin to a solution of 93% TFA, 5% H2O, 3% TIPS for 1.5 hours. Following the cleavage reaction, the mixture was evaporated and the resulting residue was re-dissolved in 30% Acetonitrile/Water and lyophilized.
Purification and Characterisation
[0627] Purification and characterisation: Following cleavage from the solid support, each of the analogs were purified by reversed-phase HPLC according to either protocol A or B described below.
[0628] Protocol A: Reversed phase HPLC was conducted using an Agilent Zorbax 300SB-C3, Sum column (9.4 mm×250 mm; Agilent Technology, Australia) installed in an Agilent HPLC 1260 Infinity system (Agilent Technologies, Santa Clara, California, USA) with the chromatogram developed using Buffer A (0.1% trifluoroacetic acid in water) and buffer B (0.1% trifluoroacetic acid in acetonitrile).
[0629] Protocol B: Reverse phase chromatography was conducted using a Novasep Axial Compression Column (5-cm diameter) loaded with cyano media (Daisogel SP-120-CN-P), with a gradient of Acetonitrile in [0.1% TFA/Water]. Following intermediate lyophilization, ion-exchange was performed on Dowex ion-exchange resin in order to obtain the peptide as the acetate salt.
[0630] Compounds 3, 4, 15 and 16 prepared as above were purified by protocol A and compounds 20, 24 and 36 prepared as above were purified by protocol B.
[0631] Identification and purity determination of the target materials were carried out using an in-line HPLC-MS system using the following conditions:
[0632] Conditions A: HPLC column: Agilent Zorbax 300-SB C3 (150×0.5 mm; 5 μm) with the following gradient conditions: 0-5 min, 20% B: 5-32 min, 20% B-100% B: 32-40 min, 100% B-20% B. The flow rate was 20 μl/min. LC-MS: Agilent 1100 series capillary LC system in-line with an Agilent 1100 series LC/MSD ion-trap mass spectrometer. The mass spectrometer was operated with electrospray ionisation configured in the positive ion mode. Data analysis software from Agilent Technologies was used to de-convolute the charged ion series for identification of the peptide material and the material then characterised by LC-MS.
[0633] Conditions B: analytical reverse phase HPLC with a cyano column (Daiso Fine Chem, SP-120-3-CN-P, 150×4.6 mm, 3 μm, 120 Å). The peptide was also analyzed by ESI LC-MS in Positive Ion Mode, using a Finnigan LCQ Deca XPMax.
[0634] Compounds 3, 4, 15 and 16 prepared and purified as described above, were each found to be greater than 95% pure according to conditions A.
[0635] Compounds 20, 24 and 36 prepared and purified as described above, were found to be greater than 95% pure according to conditions B.
[0636] Experimental masses (m/z) accorded with calculated molecular weights for each compound.
Peptide Quantitation
[0637] Quantitation of compounds 3, 4, 15 and 16 was carried out by in vacuo hydrolysis at 110° C. of samples in sealed glass vials in the presence of 6N HCl containing 0.1% phenol. Derivatisation of amino acids was then carried out using Waters AccQTag reagents according to the manufacturer's instructions followed by analysis on a Waters Acquity UPLC System (Waters Millipore) using an AccQTag ultra column (2.1 mm×100 mm; Waters Millipore). Quantitation of other compounds may be achieved by a similar protocol.
1.5—Synthesis of Sulfone and Sulfoxide Analoques of Compounds 15 and 16
[0638] Sulfone and sulfoxide derivatives of compounds 15 and 16 may be accessed by a similar synthetic routes as described above, with the omission of ethylmethylsulfide scavenger, and optional omission of nitrogen sparging, from the carbamate formation step. This reaction may yield a mixture of thiol, sulfone and sulfoxide derivatives, which may be separated and purified by HPLC.
[0639] Alternatively, sulfone or sulfoxide derivatives may be prepared by oxidation of the corresponding sulfide with an oxidant such as meta-chloroperoxybenzoic acid (MCPBA) or tert-butyl hydroperoxide (t-BuOOH) under appropriate conditions.
Example 2—Activation of Human TLR2
[0640] The potency of the compounds as activators of human and mouse TLR-2s is tested in an in vitro assay. The assay assesses NF-kB activation in the HEKBlue-mTLR-2 cell line. These cells have been stably transfected with mouse TLR-2 and express TLR-1 and TLR-6 endogenously at sufficient levels to allow for fully-functional TLR-1/2 and TLR-2/6 activation.
[0641] Toll-Like Receptor 2 (TLR2) stimulation is tested by assessing NF-kB activation in the HEKBlue-hTLR2 cell line. These cells have been stably transfected with human TLR2 and express TLR1 and TLR6 endogenously at a level sufficient to allow for fully-functional TLR1/2 and TLR2/6 activation. The activity of the test articles are tested on human TLR2 as potential agonists. The test articles are evaluated at seven concentrations and compared to control ligands. These steps are performed in triplicate.
[0642] NF-kB reporter gene assay protocol: This assay was carried out as described previously (Jackson et al. 2004; Lau et al. 2006; Sandor et al. 2003; Zeng et al 2010). HEK293T cells were cultured in 96-well plates at 4×104 cells/well and transfected 24 h later with 100 ng of the NF-kB luciferase reporter gene [50 ng of TK-Renilla-luciferase expressing plasmid (Promega corporation, Madison, USA)] with or without 5 ng TLR2-expressing plasmid in the presence of 0.8 μl Fugene 6 (Roche Diagnostic). Compounds were added to the wells 24 h later at the concentrations indicated in the histograms. Cell lysates were prepared 5 h after stimulation using reporter lysis buffer (Promega Corporation, Madison, USA). Luciferase activities in the cell lysates were determined using a reagent kit (Promega Corporation, Madison, USA) and using a FLUOstar microplate reader (BMG Labtech, Ortenberg, Germany). The NF-kB-dependent firefly luciferase activity is normalised with NF-kB-independent renilla luciferase activity. The relative stimulation was calculated as the ratio of the stimulated to non-stimulated samples.
[0643] The results of this assay for compounds 3, 4, 15 and 16 are shown in FIG. 1 . These data show that these compounds exhibit significant activity at TLR2.
Example 3—URT Virus Challenge
[0644] In these Examples, an upper respiratory tract (URT) influenza virus challenge model is utilised in mice, using a dose of infectious virus which replicates in the URT and then progress to the lungs. The URT model is used to determine which compounds can prevent replication and dissemination of influenza virus from the URT to the lungs.
[0645] Cytokine and chemokine profiles in the nasal turbinates, trachea, lungs and sera of animals following URT treatment with three doses or a single dose of the compounds are also measured.
[0646] The cytokine profiles of mice which were pre-treated with three doses of compounds of the invention followed by challenge with Udorn virus are also measured.
Experimental Animals
[0647] Groups of male or female C57BL/6 mice of similar age (e.g. about 6-8 week old) are used for all studies. After administration of saline, the compound or viral challenge, mice are monitored daily for weight changes, and behavioural or physical changes.
URT Administration of Compounds
[0648] Mice are anaesthetized by isoflurane inhalation and saline or various doses of the compounds, diluted in saline, are administered intranasally using a pipettor. For the multi-treatment experiments, mice receive 3 doses of the compounds of the invention every second day over a 5 day period.
Preparation of Influenza Virus
[0649] A/Udorn/307/72 (H3N2) influenza virus (ie. Udorn virus) is propagated in the allantoic cavity of 10 day-old embryonated hens' eggs. Eggs are inoculated with approximately 103 pfu of virus in 0.1 ml of saline. After 2 days incubation at 35° C. the eggs are chilled at 4° C. and allantoic fluid harvested and clarified by centrifugation. Viral infectivity titre (pfu/mL) is determined by plaque assay as described below and aliquots of the allantoic fluid were stored at −80° C. until used.
URT Virus Challenge
[0650] Mice are anaesthetised with isofluorane and inoculated intranasally with 500 pfu of Udorn virus in 10 μl of saline, using a pipettor. On day 5 post-challenge, the nasal turbinates, trachea and lung are harvested to assess viral loads.
Extraction and Preparation of Nasal Turbinates, Trachea and Lung Homogenates
[0651] Mice are killed by CO2 asphyxiation 24 hours post-treatment or 5 days post-influenza challenge. Nasal turbinates, trachea and lungs from each mouse are collected in 1.5 mL of RPMI-1640 medium with antibiotics (100 ug/mL penicillin, 180 ug/mL streptomycin and 24 ug/mL gentamicin) and kept on ice until processed. Tissues were homogenised using a tissue homogeniser and the resulting organ homogenates then centrifuged at 2,000 rpm for 5 min to remove cell debris. Supernatants are collected and stored at −80° C. for subsequent measurements.
Assessment of Viral Titres
[0652] Titres of infectious Udorn virus are determined by plaque assay on confluent monolayers of Madin Darby canine kidney (MDCK) cells. Six-well tissue culture plates were seeded with 1.2×106 MDCK cells per well in 3 ml of RP10 (RPMI-1640 medium supplemented with 10% (v/v) heat inactivated FCS, 260 ug/mL glutamine, 200 ug/mL sodium pyruvate and antibiotics). After overnight incubation at 37° C. in 5% CO2 confluent monolayers were washed with RPMI. Test supernatants serially diluted in RPMI with antibiotics, are added to duplicate wells of monolayers. After incubation at 37° C. in 5% CO2 for 45 min, monolayers are overlaid with 3 mL of agarose overlay medium containing 0.9% agarose and 2 ug/mL trypsin-TPCK treated in Leibovitz L15 medium pH6.8 with glutamine and antibiotics. Plates are incubated for 3 days at 37° C. in 5% CO2 and virus-mediated cell lysis then counted as plaques on the cell layer. The total organ viral titres (plaque forming units, PFU) for individual animals are calculated.
Determination of Cytokine Levels in Nasal Turbinates, Trachea, Lungs and Sera
[0653] IFN-γ, IL-2, IL-4, TNF, IL-10, IL-6, KC, MCP-1, RANTES, IL-12/IL-23p40 and IL-17A present in nasal turbinates, trachea, lung homogenates and serum samples were measured using a BD Cytometric Bead Array (CBA) Flex Kit according to the manufacturer's instructions with the exception that a total of 0.15 μl of each capture bead suspension and 0.15 μl of each PE-detection reagent is used in each 50 μl sample. Samples were analysed using a Bection Dickinson FACSCanto II flow cytometer and the data analysed using FCAP Array multiplex software.
Statistical Analyses
[0654] A one-way analysis of variance (ANOVA) with Tukey comparison of all column tests may be used. A two-way ANOVA with Bonferroni's test may be used to compare the same treatment groups in the single and 3 repeat dose regimes. A p-value<0.0322 was considered statistically significant. Statistical analyses are performed using suitable software, such as GraphPad Prism, version 7.0.
Example 4—Assessing the Effect of Pre-Treatment with Different Doses of Compounds of the Invention on the Outcome of URT Challenge with Udorn Virus
[0655] This experiment is performed to determine the anti-viral effect of URT pre-treatment with various doses of the compounds of the invention.
[0656] On day 0 mice (5 animals/group) receive either saline, 5 nmoles, 0.1 nmoles or 0.005 nmoles of compound of the invention, administered intranasally in 10 μl after being anaesthetized with isoflurane. On day 1 following administration with compound of the invention, mice are challenged intranasally with 500 pfu of Udorn virus in a volume of 10 μl after being anaesthetized with isoflurane. Mice are killed on day 5 and nasal turbinates trachea and lungs were removed, homogenised and frozen for subsequent analyses.
[0657] The experimental design is summarised in the schematic below
[0658]
Example 5—TLR2 Activation by Various Compounds
[0659] Comparison of the abilities of various compounds to stimulate luciferase activity in an NF-κB cell-based reporter system is determined. HEK293T cells, transiently co-transfected with a human TLR2 plasmid and a luciferase-NF-κB plasmid reporter system, are exposed to various dilutions of each compound. Successful receptor binding and subsequent signal transduction events are determined by measuring the luminescence due to luciferase activity
Example 6—TLR Binding and Specificity
[0660] The compound of the invention is assessed for its ability to activate a range of other TLR pattern recognition receptors. These assessments are conducted using both human and mouse TLR panels. These assays detect a secreted embryonic alkaline phosphatase (SEAP) reporter under the control of a promoter which is inducible by NF-κB activation in HEK293 cells.
[0661] The secreted embryonic alkaline phosphatase (SEAP) reporter is under the control of a promoter inducible by the transcription factor NF-κB. This reporter gene allows the monitoring of signaling through the TLR, based on the activation of NF-κB. In a 96-well plate (200 μL total volume) containing the appropriate cells (50,000-75,000 cells/well), 20 μL of the test article or the positive control ligand is added to the wells. The media added to the wells is designed for the detection of NF-κB induced SEAP expression. After a 16-24 hr incubation the optical density (OD) is read at 650 nm on a Molecular Devices SpectraMax 340PC absorbance detector.
Control Ligands
-
- [0662] hTLR2: HKLM (heat-killed Listeria monocytogenes) at 1×108 cells/mL
- [0663] hTLR3: Poly(I:C) HMWat 1 μg/mL
- [0664] hTLR4: E. coli K12 LPS at 100 ng/mL
- [0665] hTLR5: S. typhimurium flagellin at 100 ng/mL
- [0666] hTLR7: CL307 at 1 μg/mL
- [0667] hTLR8: CL075 at 1 μg/mL
- [0668] hTLR9: CpG ODN2006 at 1 μg/mL.
Example 7—Stability I
[0669] Stability was assessed by tracking changes in the absolute peak area and % peak area of the compound of the invention subjected to the following conditions to the peak area and % peak area obtained from freshly prepared solutions of the relevant compound. The compound was formulated in each of the following formulations:
-
- [0670] 1. Phosphate buffered saline (PBS), pH 7.4. For example, the PBS buffer may comprise 8 g NaCl, 0.2 g KCl, 1.15 g disodium hydrogen phosphate and 0.2 g potassium dihydrogen phosphate in 1 litre of MilliQ water.
- [0671] 2. 0.9% w/w saline (pH 5.8). For example, saline solution may be prepared by dissolving sodium chloride (1.855 g) in 200 mL of Milli-Q water.
[0672] Stability for each formulation was assessed under the following conditions:
-
- [0673] 1. 25° C./60% relative humidity (ICH ambient)
- [0674] 2. 40° C./75% relative humidity (ICH accelerated)
Sample Preparation
[0675] Solutions of approximately 1 mg/mL of each compound (2 mL) were accurately prepared in the PBS and saline diluent systems. Actual concentrations are provided in Table 1.
[0676]
| TABLE 1 | ||
|---|---|---|
| Test solution concentrations for stability monitoring | ||
| Compound No. | Diluent | Conc’n (mg/mL) |
| 3 | Saline | 1.05 |
| PBS | 1.10 | |
| 4 | Saline | 1.10 |
| PBS | 1.05 | |
| 15 | Saline | 1.05 |
| PBS | 1.03 | |
| 16 | Saline | 0.990 |
| PBS | 0.956 | |
[0677] All compounds were heated to approximately 60° C. under hot running tap water for approximately 30 seconds, followed by vortex mixing for a further 30 seconds.
[0678] Each vial in Table 1 was further sub-aliquoted into 3 separate HPLC vials which were then placed into storage at 4-8° C. (fridge), 25° C./65% RH and 40° C./75% RH for 2 weeks. The vials were wrapped in aluminium foil to exclude light for the storage duration.
Equipment and Operational Parameters
[0679] A Shimadzu Nexera UHPLC with diode array detector was used to monitor peak area changes at t=0 and t=2 weeks.
[0680] A Shimadzu LCMS-8030 system was used to identify impurity and degradant peaks, and to verify the selectivity of the HPLC methods by checking across the main HPLC peak for possible co-eluting components.
UHPLC Parameters
-
- [0681] Column—Phenomenex Kinetex Biphenyl, 50×2.1 mm, 2.6 μm, part no. 00B-4622-AN
- [0682] Vials—Agilent clear glass, 2 mL with multi-injection septa, part no. 226-50512-00
- [0683] Mobile Phase A—5 mM ammonium formate in Milli-Q water
- [0684] Mobile Phase B—acetonitrile, Merck LC-MS grade
- [0685] Needle Rinse Solution—1:1 water:methanol
- [0686] Injection Volume: 1 μL
- [0687] Column Temperature: 40° C.
- [0688] Autosampler Temp: 20° C.
- [0689] Total Flow Rate: 0.5 mL/min
- [0690] Total Run Time: 10 min
- [0691] UV-vis wavelength: 205 nm
[0692]
| TABLE 2 | |||
|---|---|---|---|
| Gradient 1 | |||
| Time (min) | % A | % B | |
| Init | 55 | 45 | |
| 0.1 | 55 | 45 | |
| 8.0 | 25 | 75 | |
| 8.5 | 25 | 75 | |
| 8.6 | 55 | 45 | |
[0693]
LCMS Parameters
| TABLE 3 | |||
|---|---|---|---|
| Gradient 2 | |||
| Time (min) | % A | % B | |
| Init | 55 | 45 | |
| 0.1 | 55 | 45 | |
| 8.0 | 25 | 65 | |
| 8.5 | 25 | 65 | |
| 8.6 | 55 | 45 | |
LCMS Parameters
-
- [0694] LC injection volume: 0.1 μL
- [0695] Interface: ESI
- [0696] Interface Temperature: 350° C.
- [0697] Desolvation Temperature: 250° C.
- [0698] Nebuliser Flow: 3 L/min
- [0699] Heat Block: 400° C.
- [0700] Drying Gas Flow: 15 L/min
- [0701] Q3 scan mode: Positive
- [0702] Start Time: 1 min
- [0703] End Time: 8 min
- [0704] Start m/z: 400
- [0705] End m/z 2000 (INNA-011)
- [0706] Scan Speed: 15000/sec
Stability Results
[0707] The samples of each of compounds 3, 4, 15 and 16 were analysed using either gradient 1 (compounds 3 and 4) or 2 (compounds 15 and 16). Results are shown in the following Tables 4 and 5, and in FIGS. 2 and 3 . Results for storage at 40° C. are shown in Table 4 and results for storage at 25° C. are shown in Table 5.
[0708] The stability results compare the peak area from the sample after subjecting to the relevant conditions relative to the percent peak area of the main HPLC peak at time zero, which was normalised to 100% to exclude the contribution of impurities to the total peak area. FIG. 2 shows the 2-week data calculated by this methodology. FIG. 3 shows a second data set generated using the areas of the main peaks expressed as a percentage of the areas at time zero.
[0709]
| TABLE 4 | ||||
|---|---|---|---|---|
| Stability of compounds 3, 4, 15 and 16 overtime in saline (0.9%) or | ||||
| PBS (pH 7.4) at 40° C. | ||||
| % Peak Area ICH | % Peak Area ICH | |||
| accelerated | accelerated | |||
| Saline | Saline | PBS | PBS | |
| Compound No. | t = 0 | t = 14 days | t = 0 | t = 14 |
| 3 | 98.7 | 96.5 | 98.5 | 95.4 |
| 4 | 97.2 | 94.0 | 97.3 | 95.0 |
| 15 | 97.8 | 91.6 | 96.5 | 90.4 |
| 16 | 95.5 | 87.0 | 95.8 | 90.4 |
[0710]
| TABLE 5 | ||||
|---|---|---|---|---|
| Stability of compounds 3, 4, 15 and 16 overtime in saline (0.9%) or | ||||
| PBS (pH 7.4) at 25° C. | ||||
| % Peak Area ICH | % Peak Area ICH | |||
| accelerated | accelerated | |||
| Saline | Saline | PBS | PBS | |
| Compound No. | t = 0 | t = 14 days | t = 0 | t = 14 |
| 3 | 98.7 | 98.6 | 98.5 | 98.5 |
| 4 | 97.2 | 96.8 | 97.3 | 97.3 |
| 15 | 97.8 | 97.9 | 96.5 | 96.0 |
| 16 | 95.5 | 94.1 | 95.8 | 95.7 |
[0711] Each of compounds 3, 4, 15 and 16 demonstrated substantial stability over the 2-week test period, suggesting that they may be suitably stable during storage and post-administration.
Example 8—Stability II
[0712] The relative stabilities of compounds 4, 16, 20, 24 and 36 and that of compound (8) of WO2019/119067 were evaluated under accelerated conditions (40° C./75% RH) for 9 days. Each compound was prepared at 1 mg/mL concentration in an aqueous formulation of 0.1% w/v EDTA/0.9% saline w/v buffered to pH 5.
[0713] The structure of compound (8) of WO2019/119067 is:
[0714]
[0715] Stability was measured using reversed phase HPLC with a UV detector analytical wavelength of 205 nm. Peak areas of each compound at the 9 day time point were compared with areas at time zero. Compound stability at day 9 was calculated as a percentage of the time zero peak area data.
[0716] Compound stability was further assessed by comparison with a reference sample of the same compound. Reference samples were prepared at 1 mg/mL concentration in an aqueous formulation of 0.1% w/v EDTA/0.9% saline w/v buffered to pH 5 and frozen during the period of testing. Thawed samples were sonicated and measured by HPLC.
[0717] Data for each compound is summarised in Table 6.
[0718]
| TABLE 6 | ||||
|---|---|---|---|---|
| % RSD (relative | Estimated | |||
| area % | standard | % RSD | total | |
| recovery | deviation) in | in | % RSD | |
| Compound | (Day 9) | reference | samples | (RMS) |
| Compound (8) of | 94.4 | 0.01 | 0.02 | 0.02 |
| WO2019/119067 | ||||
| 4 | 102.1 | 0.09 | 0.03 | 0.09 |
| 16 | 100.7 | 2.70 | 0.06 | 2.70 |
| 20 | 98.7 | 0.03 | 0.06 | 0.07 |
| 24 | 98.9 | 0.03 | 0.11 | 0.11 |
| 36 | 98.4 | 0.00 | 0.23 | 0.23 |
[0719] Each of compounds 4, 16, 20, 24 and 36 is shown to possess substantial stability over the 9 day test period. Each of these compounds also possesses superior stability under the accelerated conditions than the comparator compound.
[0720] Stability of compounds over further extended periods is assessed by prolonged exposure to the accelerated conditions, for example, for 28 days.
Example 9—Activation of Human TLR2 II
[0721] The potency of the compounds as activators of human TLR-2s is tested in an in vitro assay in HEK-BLUE-hTLR2 cells.
Culturing of HEK-BLUE-hTLR2 Cells
[0722] HEK-BLUE-hTLR2 cells are designed for studying the stimulation of human TLR2 (hTLR2) by monitoring the activation of NF-kB. HEK-BLUE-hTLR2 cells are obtained by co-transfection of the hTLR2 and SEAP (secreted embryonic alkaline phosphatase) reporter genes into HEK293 cells. Stimulation with a TLR2 ligand activates NF-kB which induces the production of SEAP.
[0723] HEK-BLUE-hTLR2 cells were purchased from InvivoGen (San Diego, CA, USA). Cells were grown in DMEM supplemented with 10% FCS, 100 U/ml penicillin, 100 ug/ml streptomycin and 2 mM L-glutamine, 100 μg/mL Normocin in the presence of selection antibiotic purchased from InvivoGen and passaged when 70% confluence was reached per manufacturer's recommendation. Cells were dislodged and resuspended in test media as suggested by manufacturer for testing.
Testing of Compounds
-
- [0724] i) A serial dilution of respective compounds were prepared in saline and added in 20 ml of each dilution in triplicates per well in a flat bottom 96-well plate and placed in the incubator while waiting for the cells.
- [0725] ii) Remove HEK-BLUE-hTLR2 cells in a T-75 flask from incubator and discard the growth media.
- [0726] iii) Gently rinse the cells with prewarmed 10 ml of PBS
- [0727] iv) Add 5 ml of prewarmed PBS and place the cells in 37° C. for 2 mins and then detach the cells by gently pipetting up and down the PBS on the surface where the cells adhere.
- [0728] v) Cells suspension at the density of 280,000 cells/ml is prepared in HEK-Blue™ Detection medium which is purchased from InvivoGen and prepared according to the manufacturer's instruction,
- [0729] vi) Add immediately 180 ml of the cell suspension per well of the plate which contains the solution of the compounds. The plate is then returned to the incubator at 37° C. for 16 hr and was read at 620 nm by using an ELISA reader.
[0730] The results of this assay for compounds 4, 20, 24 and 36 are shown in FIG. 4 . These data show that these compounds exhibit significant activity at TLR2.
Claims
The invention claimed is:
1. A compound of general formula:
A-Y—B
A-Y—B
wherein A is represented by:
wherein:
b is 0;
w is 1;
v is an integer from 2 to 5;
z is 1;
X is —S—;
Z1 and Z2 are each independently selected from the group consisting of —O—, —NR—, —S—, S(═O), S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, OC(═O)O—, NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—;
R11, R12, Rx, Ry, R14, R15, R16, and R17 are each independently H or C1-C6 aliphatic;
R, R13 and R18 are each independently H or C1-C6 aliphatic;
R19 is H, C1-C6 aliphatic, an amino protecting group, L3-C(═O)—, or A2;
L1 and L2 are each independently C5-C21 aliphatic or C4-C20 heteroaliphatic;
L3 is C1-C21 aliphatic or C2-C20 heteroaliphatic;
A2 is an amino acid or a peptide;
wherein any aliphatic or heteroaliphatic present in any of R, R11, R12, R13, R14, R15, R16, R17, R18, R19, Rx, Ry, L1, L2, and L3 is optionally substituted;
Y is
wherein:
R1 and R2 are independently selected from the group consisting of H, —CH2OH, —CH2CH2OH, —CH(CH3)OH, —CH2OPO(OH)2, —CH2C(═O)NH2, —CH2CH2C(═O)OH and —CH2CH2C(═O)OR8, wherein any one of the alkyl hydrogens can be replaced with a halogen;
R8 is selected from the group consisting of H and a straight or branched C1-C6 alkyl;
and
B represents a Polyethylene Glycol (PEG), wherein the PEG is a substituted PEG according to the following formula:
wherein
n is 3 to 100;
m is 1, 2, 3, or 4;
p is 2, 3, or 4;
q is null or 1;
R3 is H, —NH2, or —OH, wherein when q is null, R3 is H and when q is 1, R3 is —NH2 or —OH;
L is null or consists of 1 to 10 units, wherein each unit has the formula:
wherein
R4 is H; and
R5 is a side chain of an amino acid selected from: the 20 naturally occurring amino acids commonly designated by three letter symbols, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvlin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine, and methionine sulfone;
or a pharmaceutically acceptable salt, solvate or prodrug thereof.
2. The compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein q is 1.
3. The compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein n is from 10 to 14.
4. The compound of claim 3, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein n is 11.
5. The compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein n is from 24 to 30.
6. The compound of claim 5, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein n is 27.
7. The compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein m is from 1 to 3.
8. The compound of claim 7, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein m is 2.
9. The compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein v is 2.
10. The compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein Rx, Ry, R13, R14, R15, R16, and R17 are H.
11. The compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein Z1 and Z2 are the same and selected from the group consisting of —O—, —NR—, —S—, S(═O), S(═O)2—, —C(═O)O—, —OC(═O)—, —C(═O)NR—, —NRC(═O)—, —C(═O)S—, —SC(═O)—, OC(═O)O—, NRC(═O)O—, —OC(═O)NR—, and —NRC(═O)NR—, wherein each R is independently H or C1-C6 aliphatic.
12. The compound according to claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein the compound is the R stereoisomer of the compound around the chiral center denoted by *:
and/or
wherein the chiral center denoted by ** in the following formula is in the L-configuration:
wherein the chiral center denoted by *** in the following formula is in the L-configuration:
13. The compound according to claim 1 selected from any one of the following compounds:
| Compound | |
|---|---|
| Compound Structure | name |
| Compound 1 |
| Compound 2 |
| Compound 3 |
| Compound 4 |
| Compound 5 |
| Compound 6 |
| Compound 7 |
| Compound 8 |
| Compound 9 |
| Compound 10 |
| Compound 11 |
| Compound 12 |
| Compound 13 |
| Compound 14 |
| Compound 15 |
| Compound 16 |
| Compound 17 |
| Compound 18 |
| Compound 19 |
| Compound 20 |
| Compound 21 |
| Compound 22 |
| Compound 23 |
| Compound 24 |
| Compound 25 |
| Compound 26 |
| Compound 27 |
| Compound 28 |
| Compound 29 |
| Compound 30 |
| Compound 31 |
| Compound 32 |
| Compound 33 |
| Compound 34 |
| Compound 35 |
| Compound 36 |
or a pharmaceutically acceptable salt, solvate or prodrug thereof.
14. A composition comprising a compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, and a pharmaceutically acceptable carrier, diluent or excipient.
15. A method of treating a disease, comprising raising an innate immune response in a subject by administering an effective amount of a compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof to the subject in need thereof.
16. The method of claim 15, wherein the disease is selected from one or more of a disease caused by an infectious agent, a respiratory disease or condition associated with a viral or bacterial infection, and a respiratory infection.
17. The method of claim 15, which is a method for reducing airway inflammation.
18. The method of claim 17, wherein the method further comprises the step of identifying a subject having a respiratory disease or condition.
19. The method of claim 18, wherein the respiratory disease or condition is not a rhinovirus infection.
20. The compound of claim 1, or a pharmaceutically acceptable salt, solvate or prodrug thereof, wherein R5 is H.
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